TCONS_00040398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040398
Unique NameTCONS_00040398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040398 ID=TCONS_00040398|Name=TCONS_00040398|organism=Clytia hemisphaerica|type=transcript|length=983bp
atatcAGAGAAATGAgttacaaaaaaagaaaaaagaagaaatgggACAAA
AGTTTTTCAGACTTATTTCTGGACTGCGATCCGATCCTTGAACAGCTCAG
TAAAGAAGATCAAAGGTGTTTGAGTGCGAAAACTTTAAAAGCAATTGAag
attggaaaaagaaaaacaaCAAGGGAACATCAAGTCGTAGCAACAGTGTT
GTATCAAGTGAACGTATAGACATAAGGAAACAATCACCTGAATTCGTTAG
AATCGAGAAGAGACGAACAGTAGCAAAAGCCAAAAAACAAGAAGATGTTT
GCAAAATATACAGGAAACCAGCTTCAAATAAGAACAAGaatcGTGAAAAC
TTTGCTCGAAGAATGTCAAGTGAACCTATACAAGATTTAGGGATTCAAAG
CAACGAAGTCCAGCACATGGTGACATTAAATGAAGATTTACCCAGTCGTG
ATGAGCCAATGCCCGAAGATACCTCATTTCAACATCATGAGatgtCGATA
AAACAAGACGTGTCGTTTGGATACGAAATCGAAATTAGAAGGCACAAGGC
ACTCATTTCAATTGACAAATATTTCACAAGAGTTGTCGTTCCTGATTACG
ATGTTGAAAATTCCCGCTTAAAAAAACGTAAATATGTTATTGTTAGTCGG
ACCTGCTGTTCAGATGATGGTGGAAATTCAGTACGTTGGTTGTTTGGGTG
TAGTTGTGATGAAGCCGAATTTGATCTTGTCAATGCTTTGAATTTCGATG
CAGGACACACGCAAACTGAAGATAGTAAGAAGTTAATTACTTCCACCAGC
TCTCACGAGATACTCGAAAGTGAATTTGATTTGAACTTATTTTcgtggaa
ttttcaaaataggaAATTAGCTTATGTTTAGCCGTGCAAACCTTtgtgag
cagaaactttcacgaggTCGAAAAATAGCGAGATTTACGACATTTATAGG
ATTAAAATGAGAACTTTTTGGACAAAAACCGGC
Run BLAST on NCBI

transcript from alignment at sc0002413:6865..9288+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040398 ID=TCONS_00040398|Name=TCONS_00040398|organism=Clytia hemisphaerica|type=transcript|length=2424bp|location=Sequence derived from alignment at sc0002413:6865..9288+ (Clytia hemisphaerica)
atatcAGAGAAATGAgttacaaaaaaagaaaaaagaagaaatgggACAAA
AGTTTTTCAGACTTATTTCTGGACTGCGATCCGATCCTTGAACAGCTCAG
TAAAGAAGATCAAAGGTGTTTGAGTGCGAAAACTTTAAAAGCAATTGAag
attggaaaaagaaaaacaagtaaGCCTAAAACTTGTTAATCACAGTGTAA
GTAAATGACAGGATACGTTTTAGAACAGTGAATAGGAACAATTAACAATG
ACATTGATATACTGGAACCAGTAATTGTAATGTGCATTctatttccaata
ttttttatttagtaaAGAAACATCGAGTGGTGAGAACTGTGCTACGTCAA
GTGGAAATAAAGATATAAGGTATGTTAAAAAACCTCTTAAGTAACAACGA
GAATTTGGCATTTATTTCTATAATTTCTATCTGACACCAACTACAATTCT
TCTATCTACACTTTTAGCAAGGGAACATCAAGTCGTAGCAACAGTGTTGT
ATCAAGTGAACGTATAGACATAAGGTATGTTTATGTGATAATTTATGcct
gcaaaatatttcaaagaaaaaggaaagttcAAGGGAATGAAGTATAACGT
TTGTAATTTATATTTACCTTGTAAAGGAAACAATCACCTGAATTCGTTAG
AATCGAGAAGAGACGAACAGTAGCAAAAGCCAAAAAACAAGAAGATGTTT
GCAAAATATACAGGAAACCAGCTTCAAATAAGAACAAGGTATTACTTCgt
atatatattatttttgattcaaaaagtaaaataacATGATTATCAATAGT
CTAAATAATAACAACAAGGGGACGCTGCAGACcaattcaatatttttaca
gaatcGTGAAAACTTTGCTCGAAGAATGTCAAGTGAACCTATACAAGATT
TAGGGATTCAAAGCAACGAAGTCCAGGTAGGCTTTTAATACTACGGTTAT
TCGTTATTTTTAGGATTTGACCTAAACGCTGAGCCTGCCCACTTTTGGTT
TAGGGTGggtatttctttaatttttcagatTATGCGCAACCggttcaagt
tttttttatctaagagttttacaagaacatttTGCATGCAAACCGCATGT
TTGACTTTNTTATCTAAGagttttacaagaacatttTGCATGCAAACCGC
ATGTTTGAATTTTAACAGTATTGAGACTTCTTTTGAACTTTCGCCTatta
ataaaattcaaattatataGCACATGGTGACATTAAATGAAGATTTACCC
AGTCGTGATGAGCCAATGCCCGAAGATACCTCATTTCAACATCATGAGGT
TAGCCAGGTTTCAGTTGTATTTCTAtgcgaaatttcaaattttttctttg
atactgattttctaaggtATGGTATGATTTTCTAAGgtatgaaattttaa
atgaatttcctaaggggggatTAGCACTTCAgggggtcctcttacctaag
gggggtaTTGACCCCTCAAGAAACTATGTAATTACATAACATTATTTCCG
TATTTGAAGTATCTGTATTTGAATTCTTAGGTTGGAATAGAGATCAGAGA
AAATAATGATGGCTCGTGTCAGGTCAGAAATTTTGGATATAAAGAATTAT
CCTTTTCAGCTTGGTAAAATTTTCGCgataattttttattctatGGCAAG
TGAataactttcacaaaaatattttttagatgtCGATAAAACAAGACGTG
TCGTTTGGATACGAAATCGAAATTAGAAGGCACAAGGCACTCATTTCAAT
TGACAAATATTTCACAAGAGTTGTCGTTCCTGATTACGATGTTGAAAATT
CCCGCTTAAAAGTAATTCTAATCCTTGaacttgataaaaaaaaaacgttg
cAAACATCTGCTTTTTTTCTTCTGTTGAACAATCATGTTTAACACAAAGC
TACATTGACTtttactttcttcttttcatccttaTGCCTATTTAAGtatg
atttgatttttatactGTGTATACATTTTATTGATGTTTCCCGATGTTTT
TGGGACGTTGTTCTGGGAGTTATCTAAATATGAaataaaccaattttttt
ttaaatatttccagAAACGTAAATATGTTATTGTTAGTCGGACCTGCTGT
TCAGATGATGGTGGAAATTCAGTACGTTGGTTGTTTGGGTGTAGTTGTGA
TGAAGCCGAATTTGATCTTGTCAATGCTTTGAATTTCGATGCAGGACACA
CGCAAACTGAAGATAGTAAGAAGTTAATTACTTCCACCAGCTCTCACGAG
ATACTCGAAAGTGAATTTGATTTGAACTTATTTTcgtggaattttcaaaa
taggaAATTAGCTTATGTTTAGCCGTGCAAACCTTtgtgagcagaaactt
tcacgaggTCGAAAAATAGCGAGATTTACGACATTTATAGGATTAAAATG
AGAACTTTTTGGACAAAAACCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024551XLOC_024551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040398-exon-sc0002413-1491911889:6865..7033TCONS_00040398-exon-sc0002413-1491911889:6865..7033Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1510915933:6865..7033TCONS_00040398-exon-sc0002413-1510915933:6865..7033Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1575043694:6865..7033TCONS_00040398-exon-sc0002413-1575043694:6865..7033Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1491911889:7332..7388TCONS_00040398-exon-sc0002413-1491911889:7332..7388Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1510915933:7332..7388TCONS_00040398-exon-sc0002413-1510915933:7332..7388Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1575043694:7332..7388TCONS_00040398-exon-sc0002413-1575043694:7332..7388Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1491911889:7491..7602TCONS_00040398-exon-sc0002413-1491911889:7491..7602Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1510915933:7491..7602TCONS_00040398-exon-sc0002413-1510915933:7491..7602Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1575043694:7491..7602TCONS_00040398-exon-sc0002413-1575043694:7491..7602Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1491911889:7716..7790TCONS_00040398-exon-sc0002413-1491911889:7716..7790Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1510915933:7716..7790TCONS_00040398-exon-sc0002413-1510915933:7716..7790Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1575043694:7716..7790TCONS_00040398-exon-sc0002413-1575043694:7716..7790Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1491911889:8085..8162TCONS_00040398-exon-sc0002413-1491911889:8085..8162Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1510915933:8085..8162TCONS_00040398-exon-sc0002413-1510915933:8085..8162Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1575043694:8085..8162TCONS_00040398-exon-sc0002413-1575043694:8085..8162Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1491911889:8544..8675TCONS_00040398-exon-sc0002413-1491911889:8544..8675Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1510915933:8544..8675TCONS_00040398-exon-sc0002413-1510915933:8544..8675Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1575043694:8544..8675TCONS_00040398-exon-sc0002413-1575043694:8544..8675Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1491911889:8929..9288TCONS_00040398-exon-sc0002413-1491911889:8929..9288Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1510915933:8929..9288TCONS_00040398-exon-sc0002413-1510915933:8929..9288Clytia hemisphaericaexon
TCONS_00040398-exon-sc0002413-1575043694:8929..9288TCONS_00040398-exon-sc0002413-1575043694:8929..9288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002413supercontigsc0002413:6865..9288 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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