TCONS_00040397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040397
Unique NameTCONS_00040397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1025

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040397 ID=TCONS_00040397|Name=TCONS_00040397|organism=Clytia hemisphaerica|type=transcript|length=1025bp
atatcAGAGAAATGAgttacaaaaaaagaaaaaagaagaaatgggACAAA
AGTTTTTCAGACTTATTTCTGGACTGCGATCCGATCCTTGAACAGCTCAG
TAAAGAAGATCAAAGGTGTTTGAGTGCGAAAACTTTAAAAGCAATTGAag
attggaaaaagaaaaacaaCAAGGGAACATCAAGTCGTAGCAACAGTGTT
GTATCAAGTGAACGTATAGACATAAGGAAACAATCACCTGAATTCGTTAG
AATCGAGAAGAGACGAACAGTAGCAAAAGCCAAAAAACAAGAAGATGTTT
GCAAAATATACAGGAAACCAGCTTCAAATAAGAACAAGaatcGTGAAAAC
TTTGCTCGAAGAATGTCAAGTGAACCTATACAAGATTTAGGGATTCAAAG
CAACGAAGTCCAGCACATGGTGACATTAAATGAAGATTTACCCAGTCGTG
ATGAGCCAATGCCCGAAGATACCTCATTTCAACATCATGAGGTTGGAATA
GAGATCAGAGAAAATAATGATGGCTCGTGTCAGatgtCGATAAAACAAGA
CGTGTCGTTTGGATACGAAATCGAAATTAGAAGGCACAAGGCACTCATTT
CAATTGACAAATATTTCACAAGAGTTGTCGTTCCTGATTACGATGTTGAA
AATTCCCGCTTAAAAAAACGTAAATATGTTATTGTTAGTCGGACCTGCTG
TTCAGATGATGGTGGAAATTCAGTACGTTGGTTGTTTGGGTGTAGTTGTG
ATGAAGCCGAATTTGATCTTGTCAATGCTTTGAATTTCGATGCAGGACAC
ACGCAAACTGAAGATAGTAAGAAGTTAATTACTTCCACCAGCTCTCACGA
GATACTCGAAAGTGAATTTGATTTGAACTTATTTTcgtggaattttcaaa
ataggaAATTAGCTTATGTTTAGCCGTGCAAACCTTtgtgagcagaaact
ttcacgaggTCGAAAAATAGCGAGATTTACGACATTTATAGGATTAAAAT
GAGAACTTTTTGGACAAAAACCGGC
Run BLAST on NCBI

transcript from alignment at sc0002413:6865..9288+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040397 ID=TCONS_00040397|Name=TCONS_00040397|organism=Clytia hemisphaerica|type=transcript|length=2424bp|location=Sequence derived from alignment at sc0002413:6865..9288+ (Clytia hemisphaerica)
atatcAGAGAAATGAgttacaaaaaaagaaaaaagaagaaatgggACAAA
AGTTTTTCAGACTTATTTCTGGACTGCGATCCGATCCTTGAACAGCTCAG
TAAAGAAGATCAAAGGTGTTTGAGTGCGAAAACTTTAAAAGCAATTGAag
attggaaaaagaaaaacaagtaaGCCTAAAACTTGTTAATCACAGTGTAA
GTAAATGACAGGATACGTTTTAGAACAGTGAATAGGAACAATTAACAATG
ACATTGATATACTGGAACCAGTAATTGTAATGTGCATTctatttccaata
ttttttatttagtaaAGAAACATCGAGTGGTGAGAACTGTGCTACGTCAA
GTGGAAATAAAGATATAAGGTATGTTAAAAAACCTCTTAAGTAACAACGA
GAATTTGGCATTTATTTCTATAATTTCTATCTGACACCAACTACAATTCT
TCTATCTACACTTTTAGCAAGGGAACATCAAGTCGTAGCAACAGTGTTGT
ATCAAGTGAACGTATAGACATAAGGTATGTTTATGTGATAATTTATGcct
gcaaaatatttcaaagaaaaaggaaagttcAAGGGAATGAAGTATAACGT
TTGTAATTTATATTTACCTTGTAAAGGAAACAATCACCTGAATTCGTTAG
AATCGAGAAGAGACGAACAGTAGCAAAAGCCAAAAAACAAGAAGATGTTT
GCAAAATATACAGGAAACCAGCTTCAAATAAGAACAAGGTATTACTTCgt
atatatattatttttgattcaaaaagtaaaataacATGATTATCAATAGT
CTAAATAATAACAACAAGGGGACGCTGCAGACcaattcaatatttttaca
gaatcGTGAAAACTTTGCTCGAAGAATGTCAAGTGAACCTATACAAGATT
TAGGGATTCAAAGCAACGAAGTCCAGGTAGGCTTTTAATACTACGGTTAT
TCGTTATTTTTAGGATTTGACCTAAACGCTGAGCCTGCCCACTTTTGGTT
TAGGGTGggtatttctttaatttttcagatTATGCGCAACCggttcaagt
tttttttatctaagagttttacaagaacatttTGCATGCAAACCGCATGT
TTGACTTTNTTATCTAAGagttttacaagaacatttTGCATGCAAACCGC
ATGTTTGAATTTTAACAGTATTGAGACTTCTTTTGAACTTTCGCCTatta
ataaaattcaaattatataGCACATGGTGACATTAAATGAAGATTTACCC
AGTCGTGATGAGCCAATGCCCGAAGATACCTCATTTCAACATCATGAGGT
TAGCCAGGTTTCAGTTGTATTTCTAtgcgaaatttcaaattttttctttg
atactgattttctaaggtATGGTATGATTTTCTAAGgtatgaaattttaa
atgaatttcctaaggggggatTAGCACTTCAgggggtcctcttacctaag
gggggtaTTGACCCCTCAAGAAACTATGTAATTACATAACATTATTTCCG
TATTTGAAGTATCTGTATTTGAATTCTTAGGTTGGAATAGAGATCAGAGA
AAATAATGATGGCTCGTGTCAGGTCAGAAATTTTGGATATAAAGAATTAT
CCTTTTCAGCTTGGTAAAATTTTCGCgataattttttattctatGGCAAG
TGAataactttcacaaaaatattttttagatgtCGATAAAACAAGACGTG
TCGTTTGGATACGAAATCGAAATTAGAAGGCACAAGGCACTCATTTCAAT
TGACAAATATTTCACAAGAGTTGTCGTTCCTGATTACGATGTTGAAAATT
CCCGCTTAAAAGTAATTCTAATCCTTGaacttgataaaaaaaaaacgttg
cAAACATCTGCTTTTTTTCTTCTGTTGAACAATCATGTTTAACACAAAGC
TACATTGACTtttactttcttcttttcatccttaTGCCTATTTAAGtatg
atttgatttttatactGTGTATACATTTTATTGATGTTTCCCGATGTTTT
TGGGACGTTGTTCTGGGAGTTATCTAAATATGAaataaaccaattttttt
ttaaatatttccagAAACGTAAATATGTTATTGTTAGTCGGACCTGCTGT
TCAGATGATGGTGGAAATTCAGTACGTTGGTTGTTTGGGTGTAGTTGTGA
TGAAGCCGAATTTGATCTTGTCAATGCTTTGAATTTCGATGCAGGACACA
CGCAAACTGAAGATAGTAAGAAGTTAATTACTTCCACCAGCTCTCACGAG
ATACTCGAAAGTGAATTTGATTTGAACTTATTTTcgtggaattttcaaaa
taggaAATTAGCTTATGTTTAGCCGTGCAAACCTTtgtgagcagaaactt
tcacgaggTCGAAAAATAGCGAGATTTACGACATTTATAGGATTAAAATG
AGAACTTTTTGGACAAAAACCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024551XLOC_024551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040397-exon-sc0002413-1491911889:6865..7033TCONS_00040397-exon-sc0002413-1491911889:6865..7033Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1510915933:6865..7033TCONS_00040397-exon-sc0002413-1510915933:6865..7033Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1575043694:6865..7033TCONS_00040397-exon-sc0002413-1575043694:6865..7033Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1491911889:7332..7388TCONS_00040397-exon-sc0002413-1491911889:7332..7388Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1510915933:7332..7388TCONS_00040397-exon-sc0002413-1510915933:7332..7388Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1575043694:7332..7388TCONS_00040397-exon-sc0002413-1575043694:7332..7388Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1491911889:7491..7602TCONS_00040397-exon-sc0002413-1491911889:7491..7602Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1510915933:7491..7602TCONS_00040397-exon-sc0002413-1510915933:7491..7602Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1575043694:7491..7602TCONS_00040397-exon-sc0002413-1575043694:7491..7602Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1491911889:7716..7790TCONS_00040397-exon-sc0002413-1491911889:7716..7790Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1510915933:7716..7790TCONS_00040397-exon-sc0002413-1510915933:7716..7790Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1575043694:7716..7790TCONS_00040397-exon-sc0002413-1575043694:7716..7790Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1491911889:8085..8162TCONS_00040397-exon-sc0002413-1491911889:8085..8162Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1510915933:8085..8162TCONS_00040397-exon-sc0002413-1510915933:8085..8162Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1575043694:8085..8162TCONS_00040397-exon-sc0002413-1575043694:8085..8162Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1491911889:8395..8436TCONS_00040397-exon-sc0002413-1491911889:8395..8436Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1510915933:8395..8436TCONS_00040397-exon-sc0002413-1510915933:8395..8436Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1575043694:8395..8436TCONS_00040397-exon-sc0002413-1575043694:8395..8436Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1491911889:8544..8675TCONS_00040397-exon-sc0002413-1491911889:8544..8675Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1510915933:8544..8675TCONS_00040397-exon-sc0002413-1510915933:8544..8675Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1575043694:8544..8675TCONS_00040397-exon-sc0002413-1575043694:8544..8675Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1491911889:8929..9288TCONS_00040397-exon-sc0002413-1491911889:8929..9288Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1510915933:8929..9288TCONS_00040397-exon-sc0002413-1510915933:8929..9288Clytia hemisphaericaexon
TCONS_00040397-exon-sc0002413-1575043694:8929..9288TCONS_00040397-exon-sc0002413-1575043694:8929..9288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002413supercontigsc0002413:6865..9288 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0636775	0	2.29848	2.20678	2.24711	1.64179	2.29678	2.58802	2.05637	1.44915	0.48819	0	0.625877	1.92215	1.76975	1.55612	0.383266	1.52321	2.23731	1.87102	0.278141	1.42412	3.06747	2.00243	0.661289	0.907645	1.45585	1.35515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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