TCONS_00040392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040392
Unique NameTCONS_00040392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040392 ID=TCONS_00040392|Name=TCONS_00040392|organism=Clytia hemisphaerica|type=transcript|length=580bp
CACCGCATAAACGGATTcaccggattggttaccgggtggaaataatctca
tatcataatatcatatcatatcgaccggattggttaccgggtggaaataa
tctaatatcataatatcatatcatatcatatcgaccggattggttaccgg
gtggaaatatatcaaccggattggttaccgggtggaaataatCTTATTGA
TTACATCATCACTGGCATGAagaagattcaaaattttcaatagaagcgTA
GCGTAGCGAAGCCAACCCCCAAACTCCCCAAACTAAGACCTGGGTATAAA
AATAATACTAGATTTTAAGAACTATAAAGTATACCAAATTCATTTGACCA
GCTAGTGTCCAGGTATCCATTTTTATTGTTCACGTCGTCAAGCAATTACC
ATTCTTGAAagtcttaatttttttcattccaaaCACTCCTTAGTTCACGT
ACTTGTCCAATTTCTCTCGACCAGTTTCTTCGAGTGGTGTTGTTGAGATG
TATGTACGACACAAAACAGTTGCTTCTCCATCGTCCCATCAATTGTATAA
CCGAGTCAGGAATACCAGCTGATGATGCNN
Run BLAST on NCBI

transcript from alignment at sc0002412:5429..6008

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040392 ID=TCONS_00040392|Name=TCONS_00040392|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at sc0002412:5429..6008 (Clytia hemisphaerica)
NNGCATCATCAGCTGGTATTCCTGACTCGGTTATACAATTGATGGGACGA
TGGAGAAGCAACTGTTTTGTGTCGTACATACATCTCAACAACACCACTCG
AAGAAACTGGTCGAGAGAAATTGGACAAGTACGTGAACTAAGGAGTGttt
ggaatgaaaaaaattaagactTTCAAGAATGGTAATTGCTTGACGACGTG
AACAATAAAAATGGATACCTGGACACTAGCTGGTCAAATGAATTTGGTAT
ACTTTATAGTTCTTAAAATCTAGTATTATTTTTATACCCAGGTCTTAGTT
TGGGGAGTTTGGGGGTTGGCTTCGCTACGCTAcgcttctattgaaaattt
tgaatcttctTCATGCCAGTGATGATGTAATCAATAAGattatttccacc
cggtaaccaatccggttgatatatttccacccggtaaccaatccggtcga
tatgatatgatatgatattatgatattagattatttccacccggtaacca
atccggtcgatatgatatgatattatgatatgagattatttccacccggt
aaccaatccggtgAATCCGTTTATGCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024548XLOC_024548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040392-exon-sc0002412-1491911889:5429..6008TCONS_00040392-exon-sc0002412-1491911889:5429..6008Clytia hemisphaericaexon
TCONS_00040392-exon-sc0002412-1510915933:5429..6008TCONS_00040392-exon-sc0002412-1510915933:5429..6008Clytia hemisphaericaexon
TCONS_00040392-exon-sc0002412-1575043694:5429..6008TCONS_00040392-exon-sc0002412-1575043694:5429..6008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002412supercontigsc0002412:5429..6008 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.47037	8.95281	2.86043	2.67838	24.5493	18.0816	21.5347	22.4694	24.3323	7.37552	20.8159	24.2879	18.0266	26.1342	13.2919	11.0618	13.8916	13.8665	13.359	14.7403	40.8934	29.3132	11.4284	13.4749	51.9755	50.8325	8.64688	7.37448	8.43907	8.0171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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