TCONS_00040386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040386
Unique NameTCONS_00040386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040386 ID=TCONS_00040386|Name=TCONS_00040386|organism=Clytia hemisphaerica|type=transcript|length=534bp
GACAAAATCGTTAACAAATtgacaaagataaaaaacataatgaaagaaaa
tattaaagGAACAACTACTGTGGACGATAAAAGTGACAGTAAAAATGAGA
TAATGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAACTGCCACCAAAG
GATGGTTATTGGTTTAAGCAGGGATATTTACGCGTAAAACGAAAAATTGT
TAATGATGACGATGGCGAGGATGATGACGGGGTTGATAGCGAACATGATA
CCAAGCATAATACCGAGCATGAGGATGTTGACAGTGAACATTTCATCGTT
GAGGAATCGCATCGTGTTTCACCGCTTGACGAATCTACAGAAAAACATCA
GTCGTTCCCAAATGCTGTCAATGTAGTGAGATCAGATAGCaccgaaaatg
aaaaactttctgTTGCACCGCTTGACGAATCTACAGAAAAACATCAGTCG
TTCCTAAATGCTGCCAATGTAGTGAGATCAGATAGCAccgaaaattaaaa
actttctgGTAAGTTATAGAAATCTTTATATACG
Run BLAST on NCBI

transcript from alignment at sc0002411:3448..5621+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040386 ID=TCONS_00040386|Name=TCONS_00040386|organism=Clytia hemisphaerica|type=transcript|length=2174bp|location=Sequence derived from alignment at sc0002411:3448..5621+ (Clytia hemisphaerica)
GACAAAATCGTTAACAAATtgacaaagataaaaaacataatgaaagaaaa
tattaaaggtgcttttatatatattttttttatttagactgatttttttt
ttactttgaatgaaAGCATACACCCGATGATCGGCTTCAAGGCGTGAgaa
agaaaaacgtttttttatttgttagaaTTTGGCATACTAACGAACTTATT
AAAAAGTagttattgtttttcttttatattcagGAACAACTACTGTGGAC
GATAAAAGTGACAGTAAAAATGAGGTATACCCTTTAGCAATTTTGTTTCT
GGAATTTTCGATGTTTTGCCAAGTAAATAAAAAGGCACGTGAAGTAGAAC
ACCTACACAGTATGCCATACtgaaaaccattaaaaaaccattaaaaaacc
attataattttttgttgttttttaattcCTAGTTAATTTTAATTTCGATT
TTAGATAATGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAACTGCCAC
CAAAGGATGGTTATTGGTTTAAGCAGGTGAGATATATTTAAATTCCTGCG
ATATATTCTCAATTTCGAAATGAGTCATTCGAGAAGGAGTGATAAAAAAG
ATGGGTAATATTTTTTTAGTCCTTGACTAAAGAAATTGATTGTTTAATTT
CATACTTTAGGGATATTTACGCGTAAAACGAAAAATTGTTAATGATGACG
ATGGCGAGGATGATGACGGGGTTGATAGCGAACATGATACCAAGCATAAT
ACCGAGCATGAGGATGTTGACAGTGAACATTTCATCGTTGAGGAATCGCA
TCGTGGTAAGATTGTCTTTAGTGTACCAATGGTAACATGGAATTATAATT
GAATCCCTCCTCTCTATAAACCTCATTTTACCCATTTTACTTACTTTGTT
TAGAACGAACTTGCTTTTTGGACCTACCTCGGAGGTCCTTTAAATTAACC
GATGTTCGTGTGTTCGTTCgtttgttaccagcttttctcgggattggccc
attagttttttctgattcccaaaaagtgacggagcccgattctCGAAACA
AAATTTCCGGCGGAAAATCCCGGAAATCGCTGAATTTCCTAATATTTTAT
AGCAATGCTGGAccatataaatttttttcagtccctttgcgtttttattt
tctttttctatttccATTCTATATTTActattaggtaggtccattttgCA
TTCTGTTTGTTTGTATTTTACTGATTGCCTGAAACGGCTTAATATCAATA
TATCTCGATTCATATAATTGTTATTTTCGAATCAGTTTCACCGCTTGACG
AATCTACAGAAAAACATCAGTCGTTCCCAAATGCTGTCAATGTAGTGAGA
TCAGATAGCaccgaaaatgaaaaactttctggTAAGTTATAGAAATCTTT
ATATACGataacatgaaaataaaatgaaacctctctctctttctctctct
ctctctctctctctgccaatcttaaaaaattattttacttgCTTCGTTTC
GGACAAAAGTCCTTGCTTTTATGTATTTTACTGATTGCCTGAAGCTGGGC
TTAATATCAATATATCTCGATTCATATAATTGTTATTTTCGANGCTTCGT
TTCGGACAAAAGTCCTTGCTTTTATGTATTTTACTGATTGCCTGAAGCTG
GGCTTAATATCAGTATATCTCGATTCATATAATTGTTATTTTCGAATCAG
TTTCACCACTTGACGAATCTACAGAAGAACATCAGTCGTTCCCAAATGCT
GCCAACGTGTTGAAATCAGATTGCAACGAACAGAAAATTGAAAGGCCATT
TTTGCATTCAAAAATGATTGGCGTATTTCCTAGTGGTAAGATTGTCTTGA
AAAacctcggggggggggggaaaagaAAANgaaaacccgggggggggggg
gtaacaGAAAATCATAGTGAAACCTCTTCGTTAATTTTAGTATAGCTTTT
TACTTGTTtggataaaaactcctatttTGTCTGTATTGATTGCCTGAAAC
TGGGCACAATATCAATATTTCTCGATTCATATAATTGTTATTTTCGAATC
AGTTGCACCGCTTGACGAATCTACAGAAAAACATCAGTCGTTCCTAAATG
CTGCCAATGTAGTGAGATCAGATAGCAccgaaaattaaaaactttctgGT
AAGTTATAGAAATCTTTATATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024542XLOC_024542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040386-exon-sc0002411-1491911889:3448..3505TCONS_00040386-exon-sc0002411-1491911889:3448..3505Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1510915933:3448..3505TCONS_00040386-exon-sc0002411-1510915933:3448..3505Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1575043694:3448..3505TCONS_00040386-exon-sc0002411-1575043694:3448..3505Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1491911889:3681..3721TCONS_00040386-exon-sc0002411-1491911889:3681..3721Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1510915933:3681..3721TCONS_00040386-exon-sc0002411-1510915933:3681..3721Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1575043694:3681..3721TCONS_00040386-exon-sc0002411-1575043694:3681..3721Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1491911889:3902..3973TCONS_00040386-exon-sc0002411-1491911889:3902..3973Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1510915933:3902..3973TCONS_00040386-exon-sc0002411-1510915933:3902..3973Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1575043694:3902..3973TCONS_00040386-exon-sc0002411-1575043694:3902..3973Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1491911889:4108..4252TCONS_00040386-exon-sc0002411-1491911889:4108..4252Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1510915933:4108..4252TCONS_00040386-exon-sc0002411-1510915933:4108..4252Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1575043694:4108..4252TCONS_00040386-exon-sc0002411-1575043694:4108..4252Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1491911889:4733..4828TCONS_00040386-exon-sc0002411-1491911889:4733..4828Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1510915933:4733..4828TCONS_00040386-exon-sc0002411-1510915933:4733..4828Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1575043694:4733..4828TCONS_00040386-exon-sc0002411-1575043694:4733..4828Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1491911889:5500..5621TCONS_00040386-exon-sc0002411-1491911889:5500..5621Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1510915933:5500..5621TCONS_00040386-exon-sc0002411-1510915933:5500..5621Clytia hemisphaericaexon
TCONS_00040386-exon-sc0002411-1575043694:5500..5621TCONS_00040386-exon-sc0002411-1575043694:5500..5621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002411supercontigsc0002411:3448..5621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.499657	0.301924	0	0	6.25502	3.44325	6.42291	1.72037	1.78557	3.84617	1.83636	2.07508	0	2.38773	1.23902	2.14523	0.622658	1.41118	1.60185	0.78653	0.917016	0.574534	0.624388	0.914292	3.23154	4.5959	0.367593	0.675986	0	0.336566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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