TCONS_00040378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040378
Unique NameTCONS_00040378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040378 ID=TCONS_00040378|Name=TCONS_00040378|organism=Clytia hemisphaerica|type=transcript|length=434bp
CGAGGACTTCTCCAACTTTTTTGCTAAACTGAGAAGAGAAgttttttaat
gcttttaaatgtttataaacacAGAGTTAAACTGTCTTGGCATTATATAT
CTGAGATACTTTATTCATACATTGTTTCTGGCTTGCTTGGGACGTTGATT
tattcacaaaaacaaacaaactcatATATGGATTATACTTTCACTTTTTG
CTTTTTCATATGATTGTTgtgattgaaagattttttgattatgtatggtt
ataaacattcatgacatgttttaacactggaatcttttaaattttgttgg
ctTGATACGCTGGTAAATCTCTAGTACAATTGCAATATTTATGACATTAT
GACACAGCTGAGATTCCATGACTATATGCAGGATACTTTTTGCAGGGAAT
GTTCAATATGTTAATATGCTCACATTCATTGGGN
Run BLAST on NCBI

transcript from alignment at sc0002408:20548..20981

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040378 ID=TCONS_00040378|Name=TCONS_00040378|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0002408:20548..20981 (Clytia hemisphaerica)
NCCCAATGAATGTGAGCATATTAACATATTGAACATTCCCTGCAAAAAGT
ATCCTGCATATAGTCATGGAATCTCAGCTGTGTCATAATGTCATAAATAT
TGCAATTGTACTAGAGATTTACCAGCGTATCAagccaacaaaatttaaaa
gattccagtgttaaaacatgtcatgaatgtttataaccatacataatcaa
aaaatctttcaatcacAACAATCATATGAAAAAGCAAAAAGTGAAAGTAT
AATCCATATatgagtttgtttgtttttgtgaataAATCAACGTCCCAAGC
AAGCCAGAAACAATGTATGAATAAAGTATCTCAGATATATAATGCCAAGA
CAGTTTAACTCTgtgtttataaacatttaaaagcattaaaaaacTTCTCT
TCTCAGTTTAGCAAAAAAGTTGGAGAAGTCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024540XLOC_024540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040378-exon-sc0002408-1491911889:20548..20981TCONS_00040378-exon-sc0002408-1491911889:20548..20981Clytia hemisphaericaexon
TCONS_00040378-exon-sc0002408-1510915933:20548..20981TCONS_00040378-exon-sc0002408-1510915933:20548..20981Clytia hemisphaericaexon
TCONS_00040378-exon-sc0002408-1575043694:20548..20981TCONS_00040378-exon-sc0002408-1575043694:20548..20981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002408supercontigsc0002408:20548..20981 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.827603	0	0.324136	1.8716	3.29746	1.64719	2.57008	2.09233	0.945612	0.846653	0.329551	0.544288	0.496378	0.444579	0.124132	0.480425	0.236738	0.384695	0.186052	0.473397	0.942723	0	2.17045	2.44803	0.507878	1.02426	1.73646	1.33276	0.892089	1.04732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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