TCONS_00040376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040376
Unique NameTCONS_00040376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040376 ID=TCONS_00040376|Name=TCONS_00040376|organism=Clytia hemisphaerica|type=transcript|length=939bp
GTTGATATATGGCTGAAGACCGTATCTTGTTATTGTCTGTATTTCGTATA
GTCTACCACCTACATAGACTATCTTCAACTCAACGTGGAGTGGAGTGTTC
AACGTGATCTCTTTTTCTCACAAAGTCACAAAGACTGAGAAGTAAAGAGT
TCAAGAAGTAAAGAGGATAATTCAAGATTTCACTGTCACTGACTGCTGCT
GCCATTCATAAAGTTTTGGACCATCTATCATCCATATACATCAATACTGT
TATTGTACATCATATCCAGACTGATTGGTTCCCACTGATTGATTGATACC
CAATCTTAAGggttCATCAAGTCCGCATCATTCAGTGTATAGCTACTCTG
GTCAATCTGGATTTACATTAGATACTTGGATTTACACAGTTAACTCAGAT
TTAAAGGATTCCCCCCGATTCACTTGGCTCACCAGAATACACTTGGAATA
CTTTGTTTTACTCAGTTGGCTCAATTGATactactcggctcacttgatat
tactcggctcacttgatattactcggctcacttgataTTACTCGGCTCAC
TTGATATTACTCAGCTAACTTGACACTACTCAGCTAACTTGATATTACTC
GACTAACTTGATagtactcggctcacttgattcAATTAACTTGTGTTTCA
TTTGGGTAACTCAGATTTCCGAGGCTAACCcggaatttatgatttttttt
gacatttcattgTTTACAACTTACTTGCACAGCTTTTTTAACTTGTTAAA
AAACAATAGGCTGTTAAAATAAATATACATTATATTTGAAActgtattta
tcattttttttacattcCCCTTTTCAAAACATGATATCAATCGAAGCATC
CCGTAGTTCAATCGGCAACTTTAACGGGACAAGGCAATATGATCTCCGCT
CAATTTATCGTCATTTAGTAGTCAACTCTTCTATTTCAN
Run BLAST on NCBI

transcript from alignment at sc0002408:14997..18229-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040376 ID=TCONS_00040376|Name=TCONS_00040376|organism=Clytia hemisphaerica|type=transcript|length=3233bp|location=Sequence derived from alignment at sc0002408:14997..18229- (Clytia hemisphaerica)
GTTGATATATGGCTGAAGACCGTATCTTGTTATTGTCTGTATTTCGTATA
GTCTACCACCTACATAGACTATCTTCAACTCAACGTGGAGTGGAGTGTTC
AACGTGATCTCTTTTTCTCACAAAGTCACAAAGACTGAGAAGTAAAGAGT
TCAAGAAGTAAAGAGGATAATTCAAGATTTCACTGTCACTGACTGCTGCT
GCCATTCATAAAGGTAAATCTCTATTGTGTGTGCTCCAGTAGTATCATAA
GAATATTGGCCTTCAGCAACAAGACACTCTGCGAAATACAAAAAATCTGC
AAGGTTAATTCTCAAATTAAGGGCTAGGTAGGAGTAAGAATCAGGCAATT
CCACTTATACAAAAAGTGCAGCTAGGTGGGGTAAGAATCAGGCAATTCCA
CTTATACAAAAAGTGCAGCACAGGTCACTGTTGGGTCGTTTGGCGTCTGT
TTTTATTTTGAAAACAGCTATTCTATCGATTACGTCGGTCGGTCGGTTGG
TCGATACTCGAAACCAGACAATCTAAACCAGACAGGACCGATGATCGATC
GAGTCAATCGAACCAGATCGAACGCAAGCGAAAGATTAAAATTGATTGGC
CTTTGGCAACAAGACACTCTGCTGCGAAATACAAAAAATCTGTAAGGTTA
ATTCTCAAATTAAGGGCTAGGTAGGAGGGGTAAGAATCAGGCAATTCCAC
TTACAAAAAATGCAGCGCAGGTCACTATCGGGTTGTTTGGCGTCTGCTTT
GATTTTGAAAACAGCTAATCTATCTATTACTTCCGTCTGCCAATAATAGG
GTCCGTCGGTTGATACTTGAAACCAGACAATCTCAATCGAACAGAACCGA
TGATCACACCAGATCGAACGCAAGCGAACAATTAAAATTTGATTGTTGAA
CGCAATCGAATCTCAATAGAATATTAGGCCGATGGAATCTAATGTTATGT
TTACCGTAAGCCGCCCGCATGTCAAATAAACGGCCGCGCCAAGTTGCCAT
TATTTTGTTATTTCGGCGCTTCATCAAGATTTTGAAAGATCAAAACAAAC
GGTCCGGCAAATATCCGTTTAAAAACGAACCCGTACGGCCCTACAATCTC
TTTAAAAGTGCGCTTCTTTGATTTTTTTAATTATGGAGATAATTTTTTTG
CTCGCAACTTATTGGGAATTTTCTCCCTAAAATAATGAATAATGAATAAT
GAAAACTTGGCCGCTAATTTTTTTGCTCGCAACTTATTGGGAATTTTCTC
CCTAAAATAATGAATAATGAATAATGAAAACTTGGCCGCTAATTTTTTTG
CTCGCAACTTATTGGGAATTTTCTCCCTAAAATAATGAATAATGAATAAT
GAAAACTTGGCCGCATCGAATTCTGAAAATTGCCATTACGATAAACATAT
CATTAAATTCCATCAGCCTTACCCCAATTTTCGGATTCGTTTGTTGTTCG
ATTGAGATTTGATTGCGTTCGATTGGGTTTGATTGCATTTGATTCAATCA
CTCGAACAAAAATCTCAATCAAACGAATCAAATATTACCTAGAATTCCGT
TGTTGGATTGAGATTTGATTGCATTCGACAATTGACAAGTTCGACAAGCC
TGGCCATTCGCCAAAATAAGTTCTTGTCAAAATTTAAAATATATTCATTC
ACCAAAATTCGTTATCACGAAGATAAAAATTTTTGCTGACTTCAGTTGTT
TGCCAAAATAAGTTCTCGCCAAAAAAAGTTCCCTTAAAGGTATTACTCCA
GGCCATGCCTAATGATTGTACTTTTTGTTAATAAGAATCATATTTGTTTT
TCGTTTTGTACAGTTTTGGACCATCTATCATCCATATACATCAATACTGT
TATTGTACATCATATCCAGACTGATTGGTTCCCACTGATTGATTGATACC
CAATCTTAAGGTGAGTTTGAGTTTCTTCAGGATTTATCATAAAAAGGCTT
GGTAAACTAATGACTTAAGTGAAAAATCAAGTTGTGTATTACCATTTACT
GCAAAATCTTTGTGAGGTTGGGGGAAGCGTGGTAAAGAGAAGCTCATTGT
TGGTTATAGTCTAGAGAAGGATTTCTGTTTTTGATTTGTAATTTTTTGTC
CTTTTTGTTTGAAACTTTTAAAGGGATAACCAGATGAAATATGAAAATTG
GCTAAAAGATTCTTTCCACGGTCCTTAGTAAGCCCTCCAAATATTTTTGT
ACAAACCTAAATATTTCGACTTTGAAAAAACAAGTAGCCTGTAAAATTTG
GAGGTTTTGGACTATGGAAGGAATCTTTGGGCTGAATTTTATTTTTTATC
TGGTTATCCCTTTAAGGTAGCTGCCCTGGAAATGAGATTTTCACTTGTAT
TTGTAAAACATCATGATCATATTTCATCTCGGGTTCTTTAGGTTGTGTGA
AAAAATTGTGACCTATAAATGCTTGCACGCCTCAATTTTCAACAAAAAGC
AAGTATCTTCCTAACAGGTGGACATATTTATGAAGTCTTCCAGAACTTGG
AACAAGCTTACGCTGCACTTGAGCTTTACGATTTATGAACATGGTAGTAT
ACTCCAGTTGAACACAACTGTTTGGGTAATTTCGTTTTTGTTTTTATTTT
TCAGGGTTCATCAAGTCCGCATCATTCAGTGTATAGCTACTCTGGTCAAT
CTGGATTTACATTAGATACTTGGATTTACACAGTTAACTCAGATTTAAAG
GATTCCCCCCGATTCACTTGGCTCACCAGAATACACTTGGAATACTTTGT
TTTACTCAGTTGGCTCAATTGATACTACTCGGCTCACTTGATATTACTCG
GCTCACTTGATATTACTCGGCTCACTTGATATTACTCGGCTCACTTGATA
TTACTCAGCTAACTTGACACTACTCAGCTAACTTGATATTACTCGACTAA
CTTGATAGTACTCGGCTCACTTGATTCAATTAACTTGTGTTTCATTTGGG
TAACTCAGATTTCCGAGGCTAACCCGGAATTTATGATTTTTTTTGACATT
TCATTGTTTACAACTTACTTGCACAGCTTTTTTAACTTGTTAAAAAACAA
TAGGCTGTTAAAATAAATATACATTATATTTGAAACTGTATTTATCATTT
TTTTTACATTCCCCTTTTCAAAACATGATATCAATCGAAGCATCCCGTAG
TTCAATCGGCAACTTTAACGGGACAAGGCAATATGATCTCCGCTCAATTT
ATCGTCATTTAGTAGTCAACTCTTCTATTTCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024538XLOC_024538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040376-exon-sc0002408-1575043694:18017..18229TCONS_00040376-exon-sc0002408-1575043694:18017..18229Clytia hemisphaericaexon
TCONS_00040376-exon-sc0002408-1575043694:16320..16416TCONS_00040376-exon-sc0002408-1575043694:16320..16416Clytia hemisphaericaexon
TCONS_00040376-exon-sc0002408-1575043694:14997..15625TCONS_00040376-exon-sc0002408-1575043694:14997..15625Clytia hemisphaericaexon
TCONS_00040376-exon-sc0002408-1510915933:18017..18229TCONS_00040376-exon-sc0002408-1510915933:18017..18229Clytia hemisphaericaexon
TCONS_00040376-exon-sc0002408-1510915933:16320..16416TCONS_00040376-exon-sc0002408-1510915933:16320..16416Clytia hemisphaericaexon
TCONS_00040376-exon-sc0002408-1510915933:14997..15625TCONS_00040376-exon-sc0002408-1510915933:14997..15625Clytia hemisphaericaexon
TCONS_00040376-exon-sc0002408-1491911889:18017..18229TCONS_00040376-exon-sc0002408-1491911889:18017..18229Clytia hemisphaericaexon
TCONS_00040376-exon-sc0002408-1491911889:16320..16416TCONS_00040376-exon-sc0002408-1491911889:16320..16416Clytia hemisphaericaexon
TCONS_00040376-exon-sc0002408-1491911889:14997..15625TCONS_00040376-exon-sc0002408-1491911889:14997..15625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002408supercontigsc0002408:14997..18229 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.43685	3.6277	2.05974	1.72318	20.2756	14.6375	10.9038	11.5678	3.30775	5.69855	4.94822	3.99085	4.91099	3.3693	3.34277	4.56987	4.24807	4.38809	4.33521	7.80655	6.80259	6.82707	5.57907	6.85766	7.12182	9.44216	5.42357	2.6753	5.83106	3.52176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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