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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040375 ID=TCONS_00040375|Name=TCONS_00040375|organism=Clytia hemisphaerica|type=transcript|length=970bp
GGCAGGGTCTTTTCTTTCAGATTGTGAAGACACACTGTTTGGGATGTCGT
GGAGGGATCTGTTGGAGAAAAACCCAAGGAGTGGTTTGTGGTCGACTTCT
TTCGTGCGATCATCGCAACCAAGAACGAAATGCTTTTCCTTGTCAATACT
ATAGGTAACAGCAAGGGCTTCTCCTTCGATAGGCCCATAGTTGGATTCTG
CAGGTGATGGGAAGCGGCTTCCAACCAACACGACTTTCCATCCGGTTGGG
CAGCAAAAGGGCTTGACACCACCACAAGAACAGTGTTTCTGAAAGAGCCA
GTAGCCGATTCCAAGTTTGGACCAATCAGTTGCAGGACACGTAGGTTTCG
ATTTGTCAAAGATGCGGACACCATTCTTTACCTCGTCGACGATTGTCTGT
TTTGATTCTTCAAAGAATCGTCCCAATAAAATGACGACTATGGCTTGAGG
GGATTTCGAAACGGTTGCATGTGTGATGCCACACTGAACGTGCATGCGAC
CTGGTTTACCAGCCCGAACCAGGAGCGAACGTCTGTGATGTTTTTTGGGG
TCGGGAATTCCCTAATTGCATGTAGGATGCCATCGCTGGGTTGGACTTCA
GTTGGAGTGATTTTGAAGCCTGAGAATTCGACGGTGTCTACTCCGAGGAT
GAATTTGCTTGGGTTTTGGATGATGCCGTTCTTTCCGCATAGGTCGAGCC
ATCGAGCAGCCTGGAAGAAACTTCTCTTTTGATCTTGTTGGGGAAGTCTG
CAGCTATTTTGTCAAAGTGTCGGGTGTTGGAATCGCTGGATGAAACATAA
CCTCGTGGTGCCGTACAGTAACGATAACGGCCCCAAGGTGTAATAAAGGT
TGTGAAATGTCTGTCCTCTGGTTGAAAAGGGACAGTATGATACCCACGCA
TCAGATACTGTTTTCTTAACCCCTTCAGGGATGTGCGAACCTGGTGGAAA
GAGGGTTGAGTGTGGTGGGT Run BLAST on NCBI protein sequence of TCONS_00040375-protein >TCONS_00040375-protein ID=TCONS_00040375-protein|Name=TCONS_00040375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MHVQCGITHATVSKSPQAIVVILLGRFFEESKQTIVDEVKNGVRIFDKSK
PTCPATDWSKLGIGYWLFQKHCSCGGVKPFCCPTGWKVVLVGSRFPSPAE
SNYGPIEGEALAVTYSIDKEKHFVLGCDDRTKEVDHKPLLGFFSNRSLHD
IPNSVSSQSERKDPA Run BLAST on NCBI transcript from alignment at sc0002407:10693..11662 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040375 ID=TCONS_00040375|Name=TCONS_00040375|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at sc0002407:10693..11662 (Clytia hemisphaerica)
ACCCACCACACTCAACCCTCTTTCCACCAGGTTCGCACATCCCTGAAGGG
GTTAAGAAAACAGTATCTGATGCGTGGGTATCATACTGTCCCTTTTCAAC
CAGAGGACAGACATTTCACAACCTTTATTACACCTTGGGGCCGTTATCGT
TACTGTACGGCACCACGAGGTTATGTTTCATCCAGCGATTCCAACACCCG
ACACTTTGACAAAATAGCTGCAGACTTCCCCAACAAGATCAAAAGAGAAG
TTTCTTCCAGGCTGCTCGATGGCTCGACCTATGCGGAAAGAACGGCATCA
TCCAAAACCCAAGCAAATTCATCCTCGGAGTAGACACCGTCGAATTCTCA
GGCTTCAAAATCACTCCAACTGAAGTCCAACCCAGCGATGGCATCCTACA
TGCAATTAGGGAATTCCCGACCCCAAAAAACATCACAGACGTTCGCTCCT
GGTTCGGGCTGGTAAACCAGGTCGCATGCACGTTCAGTGTGGCATCACAC
ATGCAACCGTTTCGAAATCCCCTCAAGCCATAGTCGTCATTTTATTGGGA
CGATTCTTTGAAGAATCAAAACAGACAATCGTCGACGAGGTAAAGAATGG
TGTCCGCATCTTTGACAAATCGAAACCTACGTGTCCTGCAACTGATTGGT
CCAAACTTGGAATCGGCTACTGGCTCTTTCAGAAACACTGTTCTTGTGGT
GGTGTCAAGCCCTTTTGCTGCCCAACCGGATGGAAAGTCGTGTTGGTTGG
AAGCCGCTTCCCATCACCTGCAGAATCCAACTATGGGCCTATCGAAGGAG
AAGCCCTTGCTGTTACCTATAGTATTGACAAGGAAAAGCATTTCGTTCTT
GGTTGCGATGATCGCACGAAAGAAGTCGACCACAAACCACTCCTTGGGTT
TTTCTCCAACAGATCCCTCCACGACATCCCAAACAGTGTGTCTTCACAAT
CTGAAAGAAAAGACCCTGCC Coding sequence (CDS) from alignment at sc0002407:10693..11662 >TCONS_00040375 ID=TCONS_00040375|Name=TCONS_00040375|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0002407:10693..11662 (Clytia hemisphaerica)
ATGCACGTTCAGTGTGGCATCACACATGCAACCGTTTCGAAATCCCCTCA
AGCCATAGTCGTCATTTTATTGGGACGATTCTTTGAAGAATCAAAACAGA
CAATCGTCGACGAGGTAAAGAATGGTGTCCGCATCTTTGACAAATCGAAA
CCTACGTGTCCTGCAACTGATTGGTCCAAACTTGGAATCGGCTACTGGCT
CTTTCAGAAACACTGTTCTTGTGGTGGTGTCAAGCCCTTTTGCTGCCCAA
CCGGATGGAAAGTCGTGTTGGTTGGAAGCCGCTTCCCATCACCTGCAGAA
TCCAACTATGGGCCTATCGAAGGAGAAGCCCTTGCTGTTACCTATAGTAT
TGACAAGGAAAAGCATTTCGTTCTTGGTTGCGATGATCGCACGAAAGAAG
TCGACCACAAACCACTCCTTGGGTTTTTCTCCAACAGATCCCTCCACGAC
ATCCCAAACAGTGTGTCTTCACAATCTGAAAGAAAAGACCCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040375-exon-sc0002407-1491911889:10693..11662 | TCONS_00040375-exon-sc0002407-1491911889:10693..11662 | Clytia hemisphaerica | exon |
| TCONS_00040375-exon-sc0002407-1510915933:10693..11662 | TCONS_00040375-exon-sc0002407-1510915933:10693..11662 | Clytia hemisphaerica | exon |
| TCONS_00040375-exon-sc0002407-1575043694:10693..11662 | TCONS_00040375-exon-sc0002407-1575043694:10693..11662 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002407 | supercontig | sc0002407:10693..11662 . |
Blast
The following BLAST results are available for this feature:
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