TCONS_00040374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040374
Unique NameTCONS_00040374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040374 ID=TCONS_00040374|Name=TCONS_00040374|organism=Clytia hemisphaerica|type=transcript|length=389bp
TATGTGGCTTGTTATTATAGATTTATGGAAATAAGGTGTTGAAACTTTTA
GCTAAAGAAAAAAAGCCATGGGAGATGATAAAGAAAATGTACCTAAAGAT
TCCAAGTTGAGTGAATATTCAATttatgatgaagatgaagagaGGAGGAA
AGTTCGAGCTGAATATCGACATCTCAACCAAATATCAGaagAAAATGCGG
AGGAGATCATTCGGCCAACTTctacaaaaatcagtgaaattaTCAAAGTA
GGAGAAGATCTTTTcagtaaaggttggtttttttgttttttttagtaaaa
ttgTATCAAACATATCTCTCAATAAATACAAAGTATTTGGTTTTTAAGCG
agtggaagataatttgttccAAGAGTTTCTGTAGATAGT
Run BLAST on NCBI

transcript from alignment at sc0002407:22648..23247+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040374 ID=TCONS_00040374|Name=TCONS_00040374|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at sc0002407:22648..23247+ (Clytia hemisphaerica)
TATGTGGCTTGTTATTATAGATTTATGGAAATAAGGTGTTGAAACTTTTA
GCTAAAGAAAAAAAGCCATGGGAGATGATAAAGAAAATGTACCTAAAGAT
TCCAAGTTGAGTGAATATTCAATttatgatgaagatgaagagaGGAGGAA
AGTTCGAGCTGAATATCGACATCTCAACCAAATATCAGaaggtaaaagaa
aaatataggaactttcaaattcaattcaatGTCAACTAGACTTTTTTAAG
AATAATGATTGGTGTCATTTTTCTATTTATCGCTTCTTTTTTTATATCAC
TCAGCTTCTTTCATTGAACCTGATTTTAAAGATGCAGTTGACAGCTAAAA
TGGTTACATTTGAATACATGACAAATAACAAATACATAACTTTTGCATTC
AGAAAATGCGGAGGAGATCATTCGGCCAACTTctacaaaaatcagtgaaa
ttaTCAAAGTAGGAGAAGATCTTTTcagtaaaggttggtttttttgtttt
ttttagtaaaattgTATCAAACATATCTCTCAATAAATACAAAGTATTTG
GTTTTTAAGCGagtggaagataatttgttccAAGAGTTTCTGTAGATAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024536XLOC_024536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040374-exon-sc0002407-1491911889:22648..22838TCONS_00040374-exon-sc0002407-1491911889:22648..22838Clytia hemisphaericaexon
TCONS_00040374-exon-sc0002407-1510915933:22648..22838TCONS_00040374-exon-sc0002407-1510915933:22648..22838Clytia hemisphaericaexon
TCONS_00040374-exon-sc0002407-1575043694:22648..22838TCONS_00040374-exon-sc0002407-1575043694:22648..22838Clytia hemisphaericaexon
TCONS_00040374-exon-sc0002407-1491911889:23050..23247TCONS_00040374-exon-sc0002407-1491911889:23050..23247Clytia hemisphaericaexon
TCONS_00040374-exon-sc0002407-1510915933:23050..23247TCONS_00040374-exon-sc0002407-1510915933:23050..23247Clytia hemisphaericaexon
TCONS_00040374-exon-sc0002407-1575043694:23050..23247TCONS_00040374-exon-sc0002407-1575043694:23050..23247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002407supercontigsc0002407:22648..23247 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
202.223	191.433	217.363	208.289	26.0482	21.0037	16.4711	18.504	28.8999	20.9845	21.1668	12.6016	5.63661	6.26208	12.7588	12.371	27.8167	19.5635	1.88568	2.41173	19.0566	13.9427	75.9324	70.0609	15.8712	24.1744	8.10784	6.05703	41.1276	36.5533
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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