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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040373 ID=TCONS_00040373|Name=TCONS_00040373|organism=Clytia hemisphaerica|type=transcript|length=1682bp
AaacattaaagatggcggcaacaAATCGACAACAAATGCTGCTCCTGGGt
tatttttcttcgattttcatgCTTCAAGAGTCGAATTGGATCATGTTTTT
TGTCTGATTGGCACAAGAACTGGTGGATGataaagttttcttattatacc
tccctggatttgatgttttgtttcaattcTGTCGGTTTGGAATGAGAGAt
gcattttctttaaaaaacaggACAAGTTTGCCAATTTTGACAACAAACTA
ACTTGAATTTTGCCTGTACATGTAAATGAATTGTAACAGGGCAAGTGACT
GAATATTTTTGGAGAAATCTGACcatgttgtgcttggaaatGAAACACTT
GCGGCTTTGAAAAAGTCTGAAGTTCCTTTGCCTTGAttcattttgttgtt
tggaaaatttgaaCCTGGAGCAAAATTAACTATAGATTGAATTTTACTTG
GTGCTTCTTCTACAACAATGACACTCAACTTGTAATTGAAACCTCTTTGA
GGGAGAAATTATATACAGTAGCGGCTTATTTCCAACTTTTGAAGCTGACA
ACCACAGCCAGGGCGGCCTGTGCCTGATGAATAAATGTTATGTCAACCTC
TGAAAAAGTAAGCTAATCGTAAAGACATTGAATATCGATGTAAACAATTG
GAAATCACCTtacataactttttgaattaaaagttttcatggtaaacttt
gaaattatcttcCGTTTTgattaaaatgtggaaaacgtGTCGTGAAATAT
GAAATTATCTTTGGAATGGGTTTAAactatggaaaacttttgtagcGAAC
CATGAACATTTAATTTGCATGcgttcaaaatttggaaaacttttgtcatg
agAACATGCAGCTTGctggaaaaaatttgttttgctatttttgataactt
acattgaaatagaacttttaaaagatgacttttaatTTTATGTACACAGA
CAGTATGAAGTAATCTATATGTATCAAGTACTAACGCACAAACTTTTAAT
TACAACTGGGTGAGAATATCTACTGTAAGAAAAcaacgtttgatagcttg
aacggtcaacttgcTTTTCTTTATGATGGTTCATATTTATAGTACTTTAA
TGCGATAAACTTTTGCGGAAATTAAATTTCACGGTTGGGCCAATccccaa
aattgaaatatttcgcggggacttaatttcgcggatggcactattgtgTG
ATAATATTCTTACAATTTGCCTGTACTGTCAAATCACATTGGTCTTTGAA
ATGCGTATTATTAGCACTtttttgatgccagtaaacattcaaaaagtatt
tatttaacattttttgagttttgtttagaaatattttgccgATAAGGCCT
ACTCAAATTTTCAatgggatttaattttgcggatttttggggatgacacc
caaatttgTGAAGTCCGCAAAATTTATTTAATCTCCACAAAAGTTTATCG
CATTTAATATATTTTTGCGACCGgatcagaaaaaaagttttgtaatTGGA
CCGGTTTCCGGTAacactacactttttttttcgCCTGagcttataatttt
ttttttgacatgcATCTAAAACATGGAAAACCTTTGTCGTCAACTATATA
TAATATTGTCTTCCActtttaaaatgtgaaaaacttttgttaatTACAAT
TACGATTTTTTTACGTACTaattgaaaataag Run BLAST on NCBI transcript from alignment at sc0002406:11914..13595 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040373 ID=TCONS_00040373|Name=TCONS_00040373|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at sc0002406:11914..13595 (Clytia hemisphaerica)
cttattttcaattAGTACGTAAAAAAATCGTAATTGTAattaacaaaagt
ttttcacattttaaaagTGGAAGACAATATTATATATAGTTGACGACAAA
GGTTTTCCATGTTTTAGATgcatgtcaaaaaaaaaattataagctCAGGc
gaaaaaaaaagtgtagtgtTACCGGAAACCGGTCCAattacaaaactttt
tttctgatcCGGTCGCAAAAATATATTAAATGCGATAAACTTTTGTGGAG
ATTAAATAAATTTTGCGGACTTCAcaaatttgggtgtcatccccaaaaat
ccgcaaaattaaatcccatTGAAAATTTGAGTAGGCCTTATcggcaaaat
atttctaaacaaaactcaaaaaatgttaaataaatactttttgaatgttt
actggcatcaaaaaAGTGCTAATAATACGCATTTCAAAGACCAATGTGAT
TTGACAGTACAGGCAAATTGTAAGAATATTATCAcacaatagtgccatcc
gcgaaattaagtccccgcgaaatatttcaattttggggATTGGCCCAACC
GTGAAATTTAATTTCCGCAAAAGTTTATCGCATTAAAGTACTATAAATAT
GAACCATCATAAAGAAAAgcaagttgaccgttcaagctatcaaacgttgT
TTTCTTACAGTAGATATTCTCACCCAGTTGTAATTAAAAGTTTGTGCGTT
AGTACTTGATACATATAGATTACTTCATACTGTCTGTGTACATAAAatta
aaagtcatcttttaaaagttctatttcaatgtaagttatcaaaaatagca
aaacaaattttttccagCAAGCTGCATGTTctcatgacaaaagttttcca
aattttgaacgCATGCAAATTAAATGTTCATGGTTCgctacaaaagtttt
ccatagtTTAAACCCATTCCAAAGATAATTTCATATTTCACGACacgttt
tccacattttaatcAAAACGgaagataatttcaaagtttaccatgaaaac
ttttaattcaaaaagttatgtaAGGTGATTTCCAATTGTTTACATCGATA
TTCAATGTCTTTACGATTAGCTTACTTTTTCAGAGGTTGACATAACATTT
ATTCATCAGGCACAGGCCGCCCTGGCTGTGGTTGTCAGCTTCAAAAGTTG
GAAATAAGCCGCTACTGTATATAATTTCTCCCTCAAAGAGGTTTCAATTA
CAAGTTGAGTGTCATTGTTGTAGAAGAAGCACCAAGTAAAATTCAATCTA
TAGTTAATTTTGCTCCAGGttcaaattttccaaacaacaaaatgaaTCAA
GGCAAAGGAACTTCAGACTTTTTCAAAGCCGCAAGTGTTTCatttccaag
cacaacatgGTCAGATTTCTCCAAAAATATTCAGTCACTTGCCCTGTTAC
AATTCATTTACATGTACAGGCAAAATTCAAGTTAGTTTGTTGTCAAAATT
GGCAAACTTGTcctgttttttaaagaaaatgcaTCTCTCATTCCAAACCG
ACAgaattgaaacaaaacatcaaatccagggaggtataataagaaaactt
tatCATCCACCAGTTCTTGTGCCAATCAGACAAAAAACATGATCCAATTC
GACTCTTGAAGcatgaaaatcgaagaaaaataaCCCAGGAGCAGCATTTG
TTGTCGATTtgttgccgccatctttaatgttT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040373-exon-sc0002406-1491911889:11914..13595 | TCONS_00040373-exon-sc0002406-1491911889:11914..13595 | Clytia hemisphaerica | exon |
| TCONS_00040373-exon-sc0002406-1510915933:11914..13595 | TCONS_00040373-exon-sc0002406-1510915933:11914..13595 | Clytia hemisphaerica | exon |
| TCONS_00040373-exon-sc0002406-1575043694:11914..13595 | TCONS_00040373-exon-sc0002406-1575043694:11914..13595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002406 | supercontig | sc0002406:11914..13595 . |
Blast
The following BLAST results are available for this feature:
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