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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040365 ID=TCONS_00040365|Name=TCONS_00040365|organism=Clytia hemisphaerica|type=transcript|length=965bp
CTGAGTAAGCAGTAACACAGTATGGATCAAGAAATGACTAAAGAACCAAG
ACATGACTAAAGAACCAAGAAAGTGAGTAAactatttatatttatttgta
TCTTTAAACAAGCAGTTTATAGCAAAATCATACACACAGTTCAAATAGAT
GCTTGGAACATTGGGCATGATTTTGATATACTgctgtttttttaaataac
aacaacaacaccagCCTTTATCGTCTGTCGTGTGTAGAGTTTTCTGgtca
atttaattttgattttttaaggtacattttttcttttacatttgattttt
atttcaattcaaCTTGTGTTTTATTTAAATGGGCAATGCTTATTATAATA
GAAAACTAATATTTGGATAAAACACTGCTCATAAATAAATTGACTTCGAC
TCAAATTTAAATATCCTTTAGGTCAATTTAGTGCTTTGAAACcttaattt
attttgtttatctattttttattcTAGTGCAAAAGTCGTCGCAGCTGCTG
CCCTTGATATCATGAGTCAGCCATCTTCTCCATCTTCTCCATCTTCTGAT
GAAGAAGCTGAACAATATGAACCAGTTATGGCTGAGACCGACAGTGAAAT
AAGTGAAGCTTCTGAAGACGAGGAGGAAGAACCCGAATCTGAGAATGAAT
CGTATGAAGAAATGCAACCCATTGGACGAGGTGGTGCTGGTGTGTTTGTT
GGACGTAGAGGTGGTCGCGTTGGAGCTCGTCGAGCCCGTATCCGTGCCCC
TCGTGGACAAGGTCGTGCTCGCGGACGTGGACGTGGACGTGGTAGAGGTG
AAGGTGTGCGTATGCGTGGTGGCAAGAAAGTAAATCCTTGGAAAGAGTGG
AATGATGGACCGTTTCAATACCAGAAATTCCAATCTTTAATCAAAACGTT
GTACCAGAAAGCGTGAGTGACATTGTCAGTTTATTTTTAACGGATGAATT
GATGTCATATATTGT Run BLAST on NCBI protein sequence of TCONS_00040365-protein >TCONS_00040365-protein ID=TCONS_00040365-protein|Name=TCONS_00040365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MSQPSSPSSPSSDEEAEQYEPVMAETDSEISEASEDEEEEPESENESYEE
MQPIGRGGAGVFVGRRGGRVGARRARIRAPRGQGRARGRGRGRGRGEGVR
MRGGKKVNPWKEWNDGPFQYQKFQSLIKTLYQKA Run BLAST on NCBI transcript from alignment at sc0002401:64..1028 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040365 ID=TCONS_00040365|Name=TCONS_00040365|organism=Clytia hemisphaerica|type=transcript|length=965bp|location=Sequence derived from alignment at sc0002401:64..1028 (Clytia hemisphaerica)
ACAATATATGACATCAATTCATCCGTTAAAAATAAACTGACAATGTCACT
CACGCTTTCTGGTACAACGTTTTGATTAAAGATTGGAATTTCTGGTATTG
AAACGGTCCATCATTCCACTCTTTCCAAGGATTTACTTTCTTGCCACCAC
GCATACGCACACCTTCACCTCTACCACGTCCACGTCCACGTCCGCGAGCA
CGACCTTGTCCACGAGGGGCACGGATACGGGCTCGACGAGCTCCAACGCG
ACCACCTCTACGTCCAACAAACACACCAGCACCACCTCGTCCAATGGGTT
GCATTTCTTCATACGATTCATTCTCAGATTCGGGTTCTTCCTCCTCGTCT
TCAGAAGCTTCACTTATTTCACTGTCGGTCTCAGCCATAACTGGTTCATA
TTGTTCAGCTTCTTCATCAGAAGATGGAGAAGATGGAGAAGATGGCTGAC
TCATGATATCAAGGGCAGCAGCTGCGACGACTTTTGCACTAgaataaaaa
atagataaacaaaataaattaagGTTTCAAAGCACTAAATTGACCTAAAG
GATATTTAAATTTGAGTCGAAGTCAATTTATTTATGAGCAGTGTTTTATC
CAAATATTAGTTTTCTATTATAATAAGCATTGCCCATTTAAATAAAACAC
AAGttgaattgaaataaaaatcaaatgtaaaagaaaaaatgtaccttaaa
aaatcaaaattaaattgacCAGAAAACTCTACACACGACAGACGATAAAG
GctggtgttgttgttgttatttaaaaaaacagcAGTATATCAAAATCATG
CCCAATGTTCCAAGCATCTATTTGAACTGTGTGTATGATTTTGCTATAAA
CTGCTTGTTTAAAGAtacaaataaatataaatagtTTACTCACTTTCTTG
GTTCTTTAGTCATGTCTTGGTTCTTTAGTCATTTCTTGATCCATACTGTG
TTACTGCTTACTCAG Coding sequence (CDS) from alignment at sc0002401:64..1028 >TCONS_00040365 ID=TCONS_00040365|Name=TCONS_00040365|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0002401:64..1028 (Clytia hemisphaerica)
TCACGCTTTCTGGTACAACGTTTTGATTAAAGATTGGAATTTCTGGTATT
GAAACGGTCCATCATTCCACTCTTTCCAAGGATTTACTTTCTTGCCACCA
CGCATACGCACACCTTCACCTCTACCACGTCCACGTCCACGTCCGCGAGC
ACGACCTTGTCCACGAGGGGCACGGATACGGGCTCGACGAGCTCCAACGC
GACCACCTCTACGTCCAACAAACACACCAGCACCACCTCGTCCAATGGGT
TGCATTTCTTCATACGATTCATTCTCAGATTCGGGTTCTTCCTCCTCGTC
TTCAGAAGCTTCACTTATTTCACTGTCGGTCTCAGCCATAACTGGTTCAT
ATTGTTCAGCTTCTTCATCAGAAGATGGAGAAGATGGAGAAGATGGCTGA
CTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040365-exon-sc0002401-1491911889:64..1028 | TCONS_00040365-exon-sc0002401-1491911889:64..1028 | Clytia hemisphaerica | exon |
| TCONS_00040365-exon-sc0002401-1510915933:64..1028 | TCONS_00040365-exon-sc0002401-1510915933:64..1028 | Clytia hemisphaerica | exon |
| TCONS_00040365-exon-sc0002401-1575043694:64..1028 | TCONS_00040365-exon-sc0002401-1575043694:64..1028 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002401 | supercontig | sc0002401:64..1028 . |
Blast
The following BLAST results are available for this feature:
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