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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040360 ID=TCONS_00040360|Name=TCONS_00040360|organism=Clytia hemisphaerica|type=transcript|length=1677bp NAACGTCAATTCATGAATACATGGGGTCCTGTTCTTCATGGTAACGATAT AATGCCGATAATACATTTCCTGCAAGGTCAAGGAGTGATTGCTGTCAATA AAGTTTGCCGATTTTGTAACCAACCAATGGCAATATCTGCTTATCGTGAT GTTCTTGATGGTCACAAATGGAGATGCCCTCGACCTTGTCAAAGAACTCT TAGTTTGCGCAATGGatcattttttgcacagtggCCGAAGATACGGTTGG GAAGATTGTTTATGGTAATTTATTATTGGTCCAACAAAATAGGTGTTACA AAAATCGAGACGATGACTGATTTGCCTTTAAAAACTGTTATTGCTGTATG TCAGTCACTACGCACAGTTTGTGGTAATCATCTACAGCGGAATCCAATTG TTGTTGGAGGGGGTGGTTTCGTTGTACAGATTGATGAAACAATGATGCAC CACAGACAAAGAAATGGTGTAGGAAGAGCAGCCCAACAGCCAGTTTGGGT ATTTGGAATGGTGGACACCCAATTTACTCCTGCCCGCGGGTACATGGAAA TAGTACAAAGGAGAGACCGTGCAACATTGACCGGTGTGATCAATAGAAAT TTGGCAGCAAACAGCACCATTCATTCGGACTCCTGGGCTGCATACAATAA CCTGCCACTGCATGTCCCAAACTGTATCCAGCATGATCGTGTGAACCATA GGTATCATTTTGTGGACCCAAATACTGGAGCACACACACAGAACATCGAA TCCTACTGGAACAGGTTTAAGCATGGAATTAAATCAATGAAAGGGGTTAG AAGAGTGGATCTGACCAGTTATTTAAAGGAATTTATATGGCGTGATTGGT ATGGTTTGGATGCCCCTTTGGACAATATCATCCAAGCTATCAACATCGAC TATCCACTATAGAAGATGATTCATTTCCTTGGCTGCTGACAAACTTAACC GatcttttgttactttttatttattagtttttgtcACATTATCGTACACA TGTAAATAGCTAAACCTATATACAATTCAAGTTTCAGAAGTTtgtacttt ctttttattattgtaATCAGAAAGACATTGTTGCGTTTCATAAATATTTG GTTCTTTGGCTTATGTTGCCTGTCCAGATGCCGAAAATGAAGAGGGAAAA ATTATTTGTTAGAGTCACGAGAAAAGCATATCTTCCCGcgggtttttttt ttcctaTCCATCTTCCAATACCATGATGCATTACCCAAAACTGAAATACG ATATCGTTTAATAGACATTCAACACCAGTATAAAAACGACTATttttaaa catcaaattttcGAACTCTTTTGGCCTTTCCACGAAGCATTATTATATAA GTATACGGACATTAAAACCTACTCAATTCTAAGCCACTGCGTGTTGGCCC AAATTACTTAGAGATTGAAATTACAAACAATCAGTCTCCTTAAATCAGGC TCAGAAAGCTTCAAGAGTTTTGGCATacgcctagatatgcttatactTTG GGTATTAGTGGACCAGtgattttgggtaaatagtggaccagtcgagGATT TGGGGTAAAAAGTGAACCagtgagatattttgggtaaatagtggaccagt gagacattttgggtaaatagtggaccagtgacatattttgggtaaatagt ggaccagtgacatattttgggtaaata Run BLAST on NCBI protein sequence of Conserved uncharacterized protein >TCONS_00040360-protein ID=TCONS_00040360-protein|Name=Conserved uncharacterized protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
XRQFMNTWGPVLHGNDIMPIIHFLQGQGVIAVNKVCRFCNQPMAISAYRD VLDGHKWRCPRPCQRTLSLRNGSFFAQWPKIRLGRLFMVIYYWSNKIGVT KIETMTDLPLKTVIAVCQSLRTVCGNHLQRNPIVVGGGGFVVQIDETMMH HRQRNGVGRAAQQPVWVFGMVDTQFTPARGYMEIVQRRDRATLTGVINRN LAANSTIHSDSWAAYNNLPLHVPNCIQHDRVNHRYHFVDPNTGAHTQNIE SYWNRFKHGIKSMKGVRRVDLTSYLKEFIWRDWYGLDAPLDNIIQAINID YPL Run BLAST on NCBI transcript from alignment at sc0002399:2435..5031- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040360 ID=TCONS_00040360|Name=TCONS_00040360|organism=Clytia hemisphaerica|type=transcript|length=2597bp|location=Sequence derived from alignment at sc0002399:2435..5031- (Clytia hemisphaerica) NAACGTCAATTCATGAATACATGGGGTCCTGTTCTTCATGGTAACGATAT
AATGCCGATAATACATTTCCTGCAAGGTCAAGGAGTGATTGCTGTCAATA
AAGTTTGCCGATTTTGTAACCAACCAATGGCAATATCTGCTTATCGTGAT
GTTCTTGATGGTCACAAATGGTAAGAATTTATGCAAGGTTGAGTTTTATT
TTTCCACTTGTGGTATTTTAAAGATTTGATAGGAAGGATGGATATTAGGC
TTTGGCGGGGTAAAAGGTTGCTATATGATTTGGCAGATGCACTGGTTTTG
ACCCACAAAAATTTTCAGCTTTATTCTTAACCAAAAGTATTTTGAAAATT
TGTTCTTAGAAAAAGAAAGTTAAAAGGTTTCACTGTAAATTGTTGGATTT
AATTCATGTCTAGGAGATGCCCTCGACCTTGTCAAAGAACTCTTAGTTTG
CGCAATGGATCATTTTTTGCACAGTGGCCGAAGATACGGTTGGGAAGATT
GTTTATGGTAATTTATTATTGGTCCAACAAAATAGGTGTTACAAAAATCG
AGACGATGACTGATTTGCCTTTAAAAACTGTTATTGCTGTATGTCAGTCA
CTACGCACAGTTTGTGGTAATCATCTACAGCGGAATCCAATTGTTGTTGG
AGGGGGTGGTTTCGTTGTACAGATTGATGAAACAATGATGCACCACAGAC
AAAGAGTGAGTCTAAGATTTTTACCTATACTTAGTTGCTTCGACAAAAAA
GTACGCAAGGTCGAGATGAAATTTGTAATGTTTCTGTATGGAGGAATAGT
ACTAATAGTAATAATGACAATTGAGTAGTAAATCTTCAATTTTTCAACTT
AGCCCCTTCTGTACTTTGTTTTCGTTATTTTTTTGTTACCTACAGAATGG
TGTAGGAAGAGCAGCCCAACAGCCAGTTTGGGTATTTGGAATGGTGGACA
CCCAATTTACTCCTGCCCGCGGGTACATGGAAATAGTACAAAGGAGAGAC
CGTGCAACATTGACCGGTGTGATCAATAGAAATTTGGCAGCAAACAGCAC
CATTCATTCGGACTCCTGGGCTGCATACAATAACCTGCCACTGCATGTCC
CAAACTGTATCCAGCATGATCGTGTGAACCATAGGTATCATTTTGTGGAC
CCAAATACTGGAGCACACACACAGGTTTGTTATAAGTTTACGCTTGATTA
ACGTTTATCATTCTTGACTGGTTTAACTTGATCAAATATAACGCAATAAT
TTGAAGGGAACAATTTTAAGTCGACGAAGCGGAAAATATCTTTTTTACGG
TACTTTTTTAAAAAGATGTCTTTGAAGCTTAAAGTACATTTTTAACAACT
CTTCTCTTTTAAGAACATCGAATCCTACTGGAACAGGTTTAAGCATGGAA
TTAAATCAATGAAAGGGGTTAGAAGAGTGGATCTGACCAGTTATTTAAAG
GAATTTATATGGCGGTAAGTTGAATTTGCTCAATCTTTTGAATAATTTGC
TAGCATTTATTGTGATGTTATTTACTTTTTGCTAAAGAAAACCCACAATT
TTTATATCTTTTAAATATAAATTCTAAATTTTGTTTTTCTTCTCTAGTGA
TTGGTATGGTTTGGATGCCCCTTTGGACAATATCATCCAAGCTATCAACA
TCGACTATCCACTATAGAAGGTAAAAGCAGTAGATTTCTAACATTCATAC
ATTCATAAATTTTGAGATTGTTTAGAGAATATGGGTTTTACCACGTTTTC
CATGTATTTGAGTATTTGAGAATTATTTCATTTTCCCAAAGCTCAAAATT
TTCTGTTGTAACAGTTTTATTTTCTACATCTTTAGATGATTCATTTCCTT
GGCTGCTGACAAACTTAACCGATCTTTTGTTACTTTTTATTTATTAGTTT
TTGTCACATTATCGTACACATGTAAATAGCTAAACCTATATACAATTCAA
GTTTCAGAAGTTTGTACTTTCTTTTTATTATTGTAATCAGAAAGACATTG
TTGCGTTTCATAAATATTTGGTTCTTTGGCTTATGTTGCCTGTCCAGATG
CCGAAAATGAAGAGGGAAAAATTATTTGTTAGAGTCACGAGAAAAGCATA
TCTTCCCGCGGGTTTTTTTTTTCCTATCCATCTTCCAATACCATGATGCA
TTACCCAAAACTGAAATACGATATCGTTTAATAGACATTCAACACCAGTA
TAAAAACGACTATTTTTAAACATCAAATTTTCGAACTCTTTTGGCCTTTC
CACGAAGCATTATTATATAAGTATACGGACATTAAAACCTACTCAATTCT
AAGCCACTGCGTGTTGGCCCAAATTACTTAGAGATTGAAATTACAAACAA
TCAGTCTCCTTAAATCAGGCTCAGAAAGCTTCAAGAGTTTTGGCATACGC
CTAGATATGCTTATACTTTGGGTATTAGTGGACCAGTGATTTTGGGTAAA
TAGTGGACCAGTCGAGGATTTGGGGTAAAAAGTGAACCAGTGAGATATTT
TGGGTAAATAGTGGACCAGTGAGACATTTTGGGTAAATAGTGGACCAGTG
ACATATTTTGGGTAAATAGTGGACCAGTGACATATTTTGGGTAAATA Coding sequence (CDS) from alignment at sc0002399:2435..5031- >TCONS_00040360 ID=TCONS_00040360|Name=TCONS_00040360|organism=Clytia hemisphaerica|type=CDS|length=4560bp|location=Sequence derived from alignment at sc0002399:2435..5031- (Clytia hemisphaerica) TGATTGGTATGGTTTGGATGCCCCTTTGGACAATATCATCCAAGCTATCA ACATCGACTATCCACTATAGAACATCGAATCCTACTGGAACAGGTTTAAG CATGGAATTAAATCAATGAAAGGGGTTAGAAGAGTGGATCTGACCAGTTA TTTAAAGGAATTTATATGGCGAATGGTGTAGGAAGAGCAGCCCAACAGCC AGTTTGGGTATTTGGAATGGTGGACACCCAATTTACTCCTGCCCGCGGGT ACATGGAAATAGTACAAAGGAGAGACCGTGCAACATTGACCGGTGTGATC AATAGAAATTTGGCAGCAAACAGCACCATTCATTCGGACTCCTGGGCTGC ATACAATAACCTGCCACTGCATGTCCCAAACTGTATCCAGCATGATCGTG TGAACCATAGGTATCATTTTGTGGACCCAAATACTGGAGCACACACACAG GAGATGCCCTCGACCTTGTCAAAGAACTCTTAGTTTGCGCAATGGATCAT TTTTTGCACAGTGGCCGAAGATACGGTTGGGAAGATTGTTTATGGTAATT TATTATTGGTCCAACAAAATAGGTGTTACAAAAATCGAGACGATGACTGA TTTGCCTTTAAAAACTGTTATTGCTGTATGTCAGTCACTACGCACAGTTT GTGGTAATCATCTACAGCGGAATCCAATTGTTGTTGGAGGGGGTGGTTTC GTTGTACAGATTGATGAAACAATGATGCACCACAGACAAAGANAACGTCA ATTCATGAATACATGGGGTCCTGTTCTTCATGGTAACGATATAATGCCGA TAATACATTTCCTGCAAGGTCAAGGAGTGATTGCTGTCAATAAAGTTTGC CGATTTTGTAACCAACCAATGGCAATATCTGCTTATCGTGATGTTCTTGA TGGTCACAAATGTGATTGGTATGGTTTGGATGCCCCTTTGGACAATATCA TCCAAGCTATCAACATCGACTATCCACTATAGAACATCGAATCCTACTGG AACAGGTTTAAGCATGGAATTAAATCAATGAAAGGGGTTAGAAGAGTGGA TCTGACCAGTTATTTAAAGGAATTTATATGGCGAATGGTGTAGGAAGAGC AGCCCAACAGCCAGTTTGGGTATTTGGAATGGTGGACACCCAATTTACTC CTGCCCGCGGGTACATGGAAATAGTACAAAGGAGAGACCGTGCAACATTG ACCGGTGTGATCAATAGAAATTTGGCAGCAAACAGCACCATTCATTCGGA CTCCTGGGCTGCATACAATAACCTGCCACTGCATGTCCCAAACTGTATCC AGCATGATCGTGTGAACCATAGGTATCATTTTGTGGACCCAAATACTGGA GCACACACACAGGAGATGCCCTCGACCTTGTCAAAGAACTCTTAGTTTGC GCAATGGATCATTTTTTGCACAGTGGCCGAAGATACGGTTGGGAAGATTG TTTATGGTAATTTATTATTGGTCCAACAAAATAGGTGTTACAAAAATCGA GACGATGACTGATTTGCCTTTAAAAACTGTTATTGCTGTATGTCAGTCAC TACGCACAGTTTGTGGTAATCATCTACAGCGGAATCCAATTGTTGTTGGA GGGGGTGGTTTCGTTGTACAGATTGATGAAACAATGATGCACCACAGACA AAGANAACGTCAATTCATGAATACATGGGGTCCTGTTCTTCATGGTAACG ATATAATGCCGATAATACATTTCCTGCAAGGTCAAGGAGTGATTGCTGTC AATAAAGTTTGCCGATTTTGTAACCAACCAATGGCAATATCTGCTTATCG TGATGTTCTTGATGGTCACAAATGTGATTGGTATGGTTTGGATGCCCCTT TGGACAATATCATCCAAGCTATCAACATCGACTATCCACTATAGAACATC GAATCCTACTGGAACAGGTTTAAGCATGGAATTAAATCAATGAAAGGGGT TAGAAGAGTGGATCTGACCAGTTATTTAAAGGAATTTATATGGCGAATGG TGTAGGAAGAGCAGCCCAACAGCCAGTTTGGGTATTTGGAATGGTGGACA CCCAATTTACTCCTGCCCGCGGGTACATGGAAATAGTACAAAGGAGAGAC CGTGCAACATTGACCGGTGTGATCAATAGAAATTTGGCAGCAAACAGCAC CATTCATTCGGACTCCTGGGCTGCATACAATAACCTGCCACTGCATGTCC CAAACTGTATCCAGCATGATCGTGTGAACCATAGGTATCATTTTGTGGAC CCAAATACTGGAGCACACACACAGGAGATGCCCTCGACCTTGTCAAAGAA CTCTTAGTTTGCGCAATGGATCATTTTTTGCACAGTGGCCGAAGATACGG TTGGGAAGATTGTTTATGGTAATTTATTATTGGTCCAACAAAATAGGTGT TACAAAAATCGAGACGATGACTGATTTGCCTTTAAAAACTGTTATTGCTG TATGTCAGTCACTACGCACAGTTTGTGGTAATCATCTACAGCGGAATCCA ATTGTTGTTGGAGGGGGTGGTTTCGTTGTACAGATTGATGAAACAATGAT GCACCACAGACAAAGANAACGTCAATTCATGAATACATGGGGTCCTGTTC TTCATGGTAACGATATAATGCCGATAATACATTTCCTGCAAGGTCAAGGA GTGATTGCTGTCAATAAAGTTTGCCGATTTTGTAACCAACCAATGGCAAT ATCTGCTTATCGTGATGTTCTTGATGGTCACAAATGTGATTGGTATGGTT TGGATGCCCCTTTGGACAATATCATCCAAGCTATCAACATCGACTATCCA CTATAGAACATCGAATCCTACTGGAACAGGTTTAAGCATGGAATTAAATC AATGAAAGGGGTTAGAAGAGTGGATCTGACCAGTTATTTAAAGGAATTTA TATGGCGAATGGTGTAGGAAGAGCAGCCCAACAGCCAGTTTGGGTATTTG GAATGGTGGACACCCAATTTACTCCTGCCCGCGGGTACATGGAAATAGTA CAAAGGAGAGACCGTGCAACATTGACCGGTGTGATCAATAGAAATTTGGC AGCAAACAGCACCATTCATTCGGACTCCTGGGCTGCATACAATAACCTGC CACTGCATGTCCCAAACTGTATCCAGCATGATCGTGTGAACCATAGGTAT CATTTTGTGGACCCAAATACTGGAGCACACACACAGGAGATGCCCTCGAC CTTGTCAAAGAACTCTTAGTTTGCGCAATGGATCATTTTTTGCACAGTGG CCGAAGATACGGTTGGGAAGATTGTTTATGGTAATTTATTATTGGTCCAA CAAAATAGGTGTTACAAAAATCGAGACGATGACTGATTTGCCTTTAAAAA CTGTTATTGCTGTATGTCAGTCACTACGCACAGTTTGTGGTAATCATCTA CAGCGGAATCCAATTGTTGTTGGAGGGGGTGGTTTCGTTGTACAGATTGA TGAAACAATGATGCACCACAGACAAAGANAACGTCAATTCATGAATACAT GGGGTCCTGTTCTTCATGGTAACGATATAATGCCGATAATACATTTCCTG CAAGGTCAAGGAGTGATTGCTGTCAATAAAGTTTGCCGATTTTGTAACCA ACCAATGGCAATATCTGCTTATCGTGATGTTCTTGATGGTCACAAATGTG ATTGGTATGGTTTGGATGCCCCTTTGGACAATATCATCCAAGCTATCAAC ATCGACTATCCACTATAGAACATCGAATCCTACTGGAACAGGTTTAAGCA TGGAATTAAATCAATGAAAGGGGTTAGAAGAGTGGATCTGACCAGTTATT TAAAGGAATTTATATGGCGAATGGTGTAGGAAGAGCAGCCCAACAGCCAG TTTGGGTATTTGGAATGGTGGACACCCAATTTACTCCTGCCCGCGGGTAC ATGGAAATAGTACAAAGGAGAGACCGTGCAACATTGACCGGTGTGATCAA TAGAAATTTGGCAGCAAACAGCACCATTCATTCGGACTCCTGGGCTGCAT ACAATAACCTGCCACTGCATGTCCCAAACTGTATCCAGCATGATCGTGTG AACCATAGGTATCATTTTGTGGACCCAAATACTGGAGCACACACACAGGA GATGCCCTCGACCTTGTCAAAGAACTCTTAGTTTGCGCAATGGATCATTT TTTGCACAGTGGCCGAAGATACGGTTGGGAAGATTGTTTATGGTAATTTA TTATTGGTCCAACAAAATAGGTGTTACAAAAATCGAGACGATGACTGATT TGCCTTTAAAAACTGTTATTGCTGTATGTCAGTCACTACGCACAGTTTGT GGTAATCATCTACAGCGGAATCCAATTGTTGTTGGAGGGGGTGGTTTCGT TGTACAGATTGATGAAACAATGATGCACCACAGACAAAGANAACGTCAAT TCATGAATACATGGGGTCCTGTTCTTCATGGTAACGATATAATGCCGATA ATACATTTCCTGCAAGGTCAAGGAGTGATTGCTGTCAATAAAGTTTGCCG ATTTTGTAACCAACCAATGGCAATATCTGCTTATCGTGATGTTCTTGATG GTCACAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00040360-exon-sc0002399-1575043694:4862..5031 | TCONS_00040360-exon-sc0002399-1575043694:4862..5031 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1575043694:4327..4618 | TCONS_00040360-exon-sc0002399-1575043694:4327..4618 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1575043694:3858..4136 | TCONS_00040360-exon-sc0002399-1575043694:3858..4136 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1575043694:3568..3668 | TCONS_00040360-exon-sc0002399-1575043694:3568..3668 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1575043694:3362..3434 | TCONS_00040360-exon-sc0002399-1575043694:3362..3434 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1575043694:2435..3196 | TCONS_00040360-exon-sc0002399-1575043694:2435..3196 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1510915933:4862..5031 | TCONS_00040360-exon-sc0002399-1510915933:4862..5031 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1510915933:4327..4618 | TCONS_00040360-exon-sc0002399-1510915933:4327..4618 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1510915933:3858..4136 | TCONS_00040360-exon-sc0002399-1510915933:3858..4136 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1510915933:3568..3668 | TCONS_00040360-exon-sc0002399-1510915933:3568..3668 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1510915933:3362..3434 | TCONS_00040360-exon-sc0002399-1510915933:3362..3434 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1510915933:2435..3196 | TCONS_00040360-exon-sc0002399-1510915933:2435..3196 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1491911889:4862..5031 | TCONS_00040360-exon-sc0002399-1491911889:4862..5031 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1491911889:4327..4618 | TCONS_00040360-exon-sc0002399-1491911889:4327..4618 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1491911889:3858..4136 | TCONS_00040360-exon-sc0002399-1491911889:3858..4136 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1491911889:3568..3668 | TCONS_00040360-exon-sc0002399-1491911889:3568..3668 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1491911889:3362..3434 | TCONS_00040360-exon-sc0002399-1491911889:3362..3434 | Clytia hemisphaerica | exon |
| TCONS_00040360-exon-sc0002399-1491911889:2435..3196 | TCONS_00040360-exon-sc0002399-1491911889:2435..3196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0002399 | supercontig | sc0002399:2435..5031 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR024445 | Tnp_ISXO2-like |
Blast
The following BLAST results are available for this feature:
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