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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040355 ID=TCONS_00040355|Name=TCONS_00040355|organism=Clytia hemisphaerica|type=transcript|length=1978bp
AGAACGCTtaataaatttcaagaaaagatCTTGGTTATCTTTTTCAGGTG
AggcacaaaattttgaaattaatatgGTTTTAAACTTGCTGTCTCTTCAC
AAGGAAAATAAGCAAAATTCCAATCTTGCGCGCACGAAAATTTACCTCTC
TTTCTCTCGTTTTTCTTAGTGACCGGAATGTTCCGCGTGGCATGTCAAGA
AGACACTAAAAATTACCGAACAGATCTCAAGAACAAGCGTTTGCTATTCC
ACGGAACTAAAATGGCGCATATCATGAGTATTTTAAAGAATGGTCTGCAA
ATTGCACCCGAAGGATCGTTCCGAAGCGGCAGTGCTTATGGAAAGGGAAT
TTATTTCAGTTATGATTTTGAGACATCAAATAATTATGCACAAGGCAAAC
AGAACAAGTACATGTTTTTATGTGAGGTATCACTCGGCAAATCGTACGAC
AAGGGGAGACATCACAGAGGAGAATCGTACCCAATGTGACCATGCCATAC
GGAGCTAGTCTATTGTTAggagaaaatattcaaaacccTGGCACCAGTAA
AGATGACAATCGATATTATTATTCCTACAATCAACCAGAAATCATTGTGT
ACGATGCGAAACAAGTTAAGATCAGATACATCATCCAATACAAATAAACA
TGGCAAATTTGAGCCTTTGACCCTTAGGACCCATATAGATATATAAAACA
CTAGttagagctactctgtatttcccaagcaacggcaggtgaagcaaaaa
aatgcgaCATTTTTGCCGAAAGTTGGTCACAGTCACTAAGCTTTacatat
ccctggaccaagccaACTTTGATCGAGTATACGATATCTATGTTAGGACC
GTGATTTTGAAGAAAGGCAGTGAATACGTCGATACGTAGTGGAGATCACA
GGCCCCTGTATCGACCATTCTTAAGAAGAATTCTGTGTTCACATTTTTTA
TACATGTACAATTCTTGAGAGATGATGATAGCATGCTCTCACTTAGTCAG
TATATATCATTGTGCTATCATTTTCATGATGTTTTGATTTAAAGAGttta
attcttgatatgcgtaagtcaagatgacgtcatattttttaacgaaagca
cccaaaaaagccggtttttgacctctgtgtttctatttttagtaacagag
agaggtcaaattccggcttttttagggtgtttccgctaaGAAAATggctt
acgcatatcaagaattcaaTGTAATCTTTTAGTGATAAGCGAATAGGTGT
TTGGGTTCTGTTCAGTActacaaaatatttcttataataccgtattactt
aataaacgccccggtcgtttaaattttttggagttcaggaggggtgttta
ttggagaggggtgtttatttgaagtaatatatGGTATCCATTTTAGCcat
tcattatttttcattcattcgtttttttcattttattcattcattcaggG
ACGGATCCAGGAATTTTCCTTGGGTAGGCCAAACTTCAGCTCCCGAATtc
cgatttccccgatttcccgattttccccgattttcccaATCcggatttcc
cgattttccgattttcccaATCCCGATTCCCCTGAATTTAGTTCAACTTA
GAAGTTGTGTTTTTAAGATGCTGTTCTTTCTATTGTCAATTGGGTACGCG
AAATTAGTATTGATTTTGCTGTTAGGAATATTAGCATGAAATACATAAAA
TAGAATAACATCGCTAAAAATCTCTATGTTAGTGAATCAATTTATACACG
ATGGGATAATATTCaggaataaaaatataaatgtcTTTGTCAAAGAACTT
TTcagtttcaataaaaataaacaagatttttgttgttttatatttataaa
atcaCGATAAGCGATAATCAGTGGATCTGGAGTCAACCACAAATTccagt
aaaaatattttaatctttTTCAGAAACAGTATTTATGACTTTATGTTGTG
TTGTTGCAAAGATTTTGGCATTTGATAA Run BLAST on NCBI protein sequence of TCONS_00040355-protein >TCONS_00040355-protein ID=TCONS_00040355-protein|Name=TCONS_00040355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MFRVACQEDTKNYRTDLKNKRLLFHGTKMAHIMSILKNGLQIAPEGSFRS
GSAYGKGIYFSYDFETSNNYAQGKQNKYMFLCEVSLGKSYDKGRHHRGES
YPM Run BLAST on NCBI transcript from alignment at sc0002397:14984..18709+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040355 ID=TCONS_00040355|Name=TCONS_00040355|organism=Clytia hemisphaerica|type=transcript|length=3726bp|location=Sequence derived from alignment at sc0002397:14984..18709+ (Clytia hemisphaerica)
AGAACGCTtaataaatttcaagaaaagatCTTGGTTATCTTTTTCAGGTG
AggcacaaaattttgaaattaatatgGTTTTAAACTTGCTGTCTCTTCAC
AAGGAAAATAAGCAAAATTCCAATCTTGCGCGCACGAAAATTTACCTCTC
TTTCTCTCGTTTTTCTTAGTGACCGGAATGTTCCGCGTGGCATGTCAAGA
AGACACTAAAAATTACCGAACAGATCTCAAGAACAAGCGTTTGCTATTCC
ACGGAACTAAAATGGCGCATATCATGAGTATTTTAAAGAATGGTCTGCAA
ATTGCACCCGAAGGATCGTTCCGAAGCGGCAGTGCTTATGGAAAGGTAAC
AAACACGATATAGATCGTAGTATGTTTTGGACTTTTAGAGACTATTTTGT
TTAAACTCAAATAACCTCAACCTAGGTTAAATAACCTGAAAGAATGCACC
TTACCCaagtttattgatttttttggatCTCTCCAGTTTGAGACGAGAAT
TTGatacttttgaagcttttggtGATACAAAGtcattctgaaaatttgag
atcaaaagcTATTTCGGTTCCTTTCTTATGGCTTTTttgattcctttgtt
tttacggTCAAACCTCtcttaaaagatattttatccTACCGGGCCTAGTT
TCTATTCCGTTTCCATTTGAAgcaatgggctgttccattaaaaatccaTC
AAGGGGAGGGGGTAAACGAaccttttcaaatcaaaaagaattcGTGGAAA
TGGGGGAAATGTGTGGCAACATTTGCAAAGAAATTCTTGGAAAAATTAAC
TTCATACTTCGAGGtgacggtggacgaactaaaaccaGTCTTCTACcctc
tggaaattttagaatagaTTTTAACCccatagaaaaattaaaaagcatTC
CTTTGgacccctggaaattcttctcagaTTACCCCCTTGAAATATTCGTT
AAGCCTCGCTGTTTGGATACAAAATGGGATGGCAAGAAACATGGGAAATC
CAATCCTTTATTTCAACGATGCAATACACCTAACAACCCTTACAATGCTG
TCAGTATTTGAGAGGATTGGTAATGAATTTGCAAAGGTTTGTGGGACGGC
AAGTCTACTGATATATTGATGATATGATCTTTCTATTTTCCAGGGAATTT
ATTTCAGTTATGATTTTGAGACATCAAATAATTATGCACAAGGCAAACAG
AACAAGTACATGTTTTTATGTGAGGTAAGAATCTTCAAACAGTATAAGGC
CAatttattaagaacaagttgagaacattgcAAGGCTTCGCTGacatccg
atttcttaggatatcacacaaaaatactcacaaagtgGTTTTAATGAACA
tctttagaacatttttaaggcttgaagataaaaaaaaaagaatatccgaa
gtgtttgaaatattttagatgTTGCGTTTACTatctagcctgttagacga
aaaccggaATTGGGTTTAGTAGGAAGTTACTGGCTCTGTAATATCGCGCG
GAAATGTTGAAAGGGCTTCATAGATTCGCAAGGCTTCGCTTCGATTtatg
tacagttgacgctctctaatttgacgttctactattcgataggctccctt
attcgatgaaattccccgtccccgtcaacaagaaactctcataaatgacG
CTTCCTTATTCGATGAGCTCCCTTATTCGGTGAAAattcaattccccttg
aagatcgaattagggACCGTCAActgtaattctttttttgattatCAGAC
TTTTTGAGAGAGTGGTTTCAAGATACCTTCTCCAAAAATGAGTCTCCGCG
ACCTTTTCCCTTGGTTTTTAAGCGAcacaagaaagcctaagcggcGTAAA
GGCCTAGCAGTCGAGTCGAGTCTCTCGAGTCGGGAGAGAAATAAAgattt
aattacattaattttttgagaaaactcTTACTAATCAAGAAAGGAAGATT
TGACCATATAAGTTGGAGGTATTAATTATGTGTGGTTTTTTCTTAAGCAT
GCGCACAATAGAAAATTAGATAATTCGATTTTAGTCTGGACTCGTCAATT
GATAATTGCGCGcataggccccgacaaagtcaaATCTTTTCTACCAGTTG
CGTTTTAAAGGCCCAATTACGGTCTATCATTGTTCGGCCTCTTAAGGAAT
GTTCTTATTCACTTTACTATTCAGGTATCACTCGGCAAATCGTACGACAA
GGGGAGACATCACAGAGGAGAATCGTACCCAATGTGACCATGCCATACGG
AGCTAGTCTATTGTTAggagaaaatattcaaaacccTGGCACCAGTAAAG
ATGACAATCGATATTATTATTCCTACAATCAACCAGAAATCATTGTGTAC
GATGCGAAACAAGTTAAGATCAGATACATCATCCAATACAAATAAACATG
GCAAATTTGAGCCTTTGACCCTTAGGACCCATATAGATATATAAAACACT
AGttagagctactctgtatttcccaagcaacggcaggtgaagcaaaaaaa
tgcgaCATTTTTGCCGAAAGTTGGTCACAGTCACTAAGCTTTacatatcc
ctggaccaagccaACTTTGATCGAGTATACGATATCTATGTTAGGACCGT
GATTTTGAAGAAAGGCAGTGAATACGTCGATACGTAGTGGAGATCACAGG
CCCCTGTATCGACCATTCTTAAGAAGAATTCTGTGTTCACATTTTTTATA
CATGTACAATTCTTGAGAGATGATGATAGCATGCTCTCACTTAGTCAGTA
TATATCATTGTGCTATCATTTTCATGATGTTTTGATTTAAAGAGtttaat
tcttgatatgcgtaagtcaagatgacgtcatattttttaacgaaagcacc
caaaaaagccggtttttgacctctgtgtttctatttttagtaacagagag
aggtcaaattccggcttttttagggtgtttccgctaaGAAAATggcttac
gcatatcaagaattcaaTGTAATCTTTTAGTGATAAGCGAATAGGTGTTT
GGGTTCTGTTCAGTActacaaaatatttcttataataccgtattacttaa
taaacgccccggtcgtttaaattttttggagttcaggaggggtgtttatt
ggagaggggtgtttatttgaagtaatatatGGTATCCATTTTAGCcattc
attatttttcattcattcgtttttttcattttattcattcattcaggGAC
GGATCCAGGAATTTTCCTTGGGTAGGCCAAACTTCAGCTCCCGAATtccg
atttccccgatttcccgattttccccgattttcccaATCcggatttcccg
attttccgattttcccaATCCCGATTCCCCTGAATTTAGTTCAACTTAGA
AGTTGTGTTTTTAAGATGCTGTTCTTTCTATTGTCAATTGGGTACGCGAA
ATTAGTATTGATTTTGCTGTTAGGAATATTAGCATGAAATACATAAAATA
GAATAACATCGCTAAAAATCTCTATGTTAGTGAATCAATTTATACACGAT
GGGATAATATTCaggaataaaaatataaatgtcTTTGTCAAAGAACTTTT
cagtttcaataaaaataaacaagatttttgttgttttatatttataaaat
caCGATAAGCGATAATCAGTGGATCTGGAGTCAACCACAAATTccagtaa
aaatattttaatctttTTCAGAAACAGTATTTATGACTTTATGTTGTGTT
GTTGCAAAGATTTTGGCATTTGATAA Coding sequence (CDS) from alignment at sc0002397:14984..18709+ >TCONS_00040355 ID=TCONS_00040355|Name=TCONS_00040355|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0002397:14984..18709+ (Clytia hemisphaerica)
ATGTTCCGCGTGGCATGTCAAGAAGACACTAAAAATTACCGAACAGATCT
CAAGAACAAGCGTTTGCTATTCCACGGAACTAAAATGGCGCATATCATGA
GTATTTTAAAGAATGGTCTGCAAATTGCACCCGAAGGATCGTTCCGAAGC
GGCAGTGCTTATGGAAAGGGAATTTATTTCAGTTATGATTTTGAGACATC
AAATAATTATGCACAAGGCAAACAGAACAAGTACATGTTTTTATGTGAGG
TATCACTCGGCAAATCGTACGACAAGGGGAGACATCACAGAGGAGAATCG
TACCCAATGTGAATGTTCCGCGTGGCATGTCAAGAAGACACTAAAAATTA
CCGAACAGATCTCAAGAACAAGCGTTTGCTATTCCACGGAACTAAAATGG
CGCATATCATGAGTATTTTAAAGAATGGTCTGCAAATTGCACCCGAAGGA
TCGTTCCGAAGCGGCAGTGCTTATGGAAAGGGAATTTATTTCAGTTATGA
TTTTGAGACATCAAATAATTATGCACAAGGCAAACAGAACAAGTACATGT
TTTTATGTGAGGTATCACTCGGCAAATCGTACGACAAGGGGAGACATCAC
AGAGGAGAATCGTACCCAATGTGAATGTTCCGCGTGGCATGTCAAGAAGA
CACTAAAAATTACCGAACAGATCTCAAGAACAAGCGTTTGCTATTCCACG
GAACTAAAATGGCGCATATCATGAGTATTTTAAAGAATGGTCTGCAAATT
GCACCCGAAGGATCGTTCCGAAGCGGCAGTGCTTATGGAAAGGGAATTTA
TTTCAGTTATGATTTTGAGACATCAAATAATTATGCACAAGGCAAACAGA
ACAAGTACATGTTTTTATGTGAGGTATCACTCGGCAAATCGTACGACAAG
GGGAGACATCACAGAGGAGAATCGTACCCAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040355-exon-sc0002397-1491911889:14984..15328 | TCONS_00040355-exon-sc0002397-1491911889:14984..15328 | Clytia hemisphaerica | exon |
| TCONS_00040355-exon-sc0002397-1510915933:14984..15328 | TCONS_00040355-exon-sc0002397-1510915933:14984..15328 | Clytia hemisphaerica | exon |
| TCONS_00040355-exon-sc0002397-1575043694:14984..15328 | TCONS_00040355-exon-sc0002397-1575043694:14984..15328 | Clytia hemisphaerica | exon |
| TCONS_00040355-exon-sc0002397-1491911889:16127..16207 | TCONS_00040355-exon-sc0002397-1491911889:16127..16207 | Clytia hemisphaerica | exon |
| TCONS_00040355-exon-sc0002397-1510915933:16127..16207 | TCONS_00040355-exon-sc0002397-1510915933:16127..16207 | Clytia hemisphaerica | exon |
| TCONS_00040355-exon-sc0002397-1575043694:16127..16207 | TCONS_00040355-exon-sc0002397-1575043694:16127..16207 | Clytia hemisphaerica | exon |
| TCONS_00040355-exon-sc0002397-1491911889:17158..18709 | TCONS_00040355-exon-sc0002397-1491911889:17158..18709 | Clytia hemisphaerica | exon |
| TCONS_00040355-exon-sc0002397-1510915933:17158..18709 | TCONS_00040355-exon-sc0002397-1510915933:17158..18709 | Clytia hemisphaerica | exon |
| TCONS_00040355-exon-sc0002397-1575043694:17158..18709 | TCONS_00040355-exon-sc0002397-1575043694:17158..18709 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002397 | supercontig | sc0002397:14984..18709 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012317 | Poly(ADP-ribose)pol_cat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003950 | NAD+ ADP-ribosyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003950 |
NAD+ ADP-ribosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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