TCONS_00040354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040354
Unique NameTCONS_00040354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040354 ID=TCONS_00040354|Name=TCONS_00040354|organism=Clytia hemisphaerica|type=transcript|length=429bp
ttCAGATTTCATCTTTCATTCGAAACTTTGAAGAACGCTTGTTGTGAAAG
TGGAGTAACGAGTGCTACCCAAAGACGTGTATATATCTTATGTCCTATCA
CCAATGCCGTACACCAAGTTGAGATACACTCATAgacgttttaaatgttt
tcgaACTCATCAATAAAGAATACCAATGACAAGCCTTGATCAGAAAGTAT
TATAACGCGTTCACCAAGCCTTGATCAGAAAGTATTATAACGCGTTCACC
ATACATTGATTTAACATCACCATCATTATATTGCGACCAAAGCGCACCTG
ATGCTTTCACCGAATGGCAGTCTTCAATTACACTTAACATCCGCTATTCG
TGCGTAAAAGAAATGTAATTTAAACGTTTGGGAAACGTTTTGAAACAGAA
ATTTTGTTGCGTCCAAAGAAATACCAGGT
Run BLAST on NCBI

transcript from alignment at sc0002397:2938..3683+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040354 ID=TCONS_00040354|Name=TCONS_00040354|organism=Clytia hemisphaerica|type=transcript|length=746bp|location=Sequence derived from alignment at sc0002397:2938..3683+ (Clytia hemisphaerica)
ttCAGATTTCATCTTTCATTCGAAACTTTGAAGAACGCTTGTTGTGAAAG
TGGAGTAACGAGTGCTACCCAAAGACGTGTATATATCTTATGTCCTATCA
CCAATGCCGTACACCAAGTTGAGATACACTCATAgacgttttaaatgttt
tcgagtaagttttttttgttaaaaccaGTGCCTGTGTTTTTGTAAGGAGG
CCAACAAGGTACTGCATATTTCTTGTACGTAGATTGGACAAGCGTGGAGT
GGCTTTTTATCTTACCATTTTGAAATGAATATTACACTCCTTTTTTATAA
ATCTTAAACCTCTTACATATTTGATACCGAATGTGTTTGTGTTGAAATTA
TTATCCTTAAGATATAATTCAGAGAGATTATTCTAGCTTTAGGCTCAAAA
GATTCTGACACAGTTGCTTCTTAAAGCAGACAAAGAGTACGACTGATTCA
AAGTTTCCTTCTTTATTTCAGACTCATCAATAAAGAATACCAATGACAAG
CCTTGATCAGAAAGTATTATAACGCGTTCACCAAGCCTTGATCAGAAAGT
ATTATAACGCGTTCACCATACATTGATTTAACATCACCATCATTATATTG
CGACCAAAGCGCACCTGATGCTTTCACCGAATGGCAGTCTTCAATTACAC
TTAACATCCGCTATTCGTGCGTAAAAGAAATGTAATTTAAACGTTTGGGA
AACGTTTTGAAACAGAAATTTTGTTGCGTCCAAAGAAATACCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024517XLOC_024517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040354-exon-sc0002397-1491911889:2938..3091TCONS_00040354-exon-sc0002397-1491911889:2938..3091Clytia hemisphaericaexon
TCONS_00040354-exon-sc0002397-1510915933:2938..3091TCONS_00040354-exon-sc0002397-1510915933:2938..3091Clytia hemisphaericaexon
TCONS_00040354-exon-sc0002397-1575043694:2938..3091TCONS_00040354-exon-sc0002397-1575043694:2938..3091Clytia hemisphaericaexon
TCONS_00040354-exon-sc0002397-1491911889:3409..3683TCONS_00040354-exon-sc0002397-1491911889:3409..3683Clytia hemisphaericaexon
TCONS_00040354-exon-sc0002397-1510915933:3409..3683TCONS_00040354-exon-sc0002397-1510915933:3409..3683Clytia hemisphaericaexon
TCONS_00040354-exon-sc0002397-1575043694:3409..3683TCONS_00040354-exon-sc0002397-1575043694:3409..3683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002397supercontigsc0002397:2938..3683 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.688258	0.780452	0	0.409808	1.17002	0.171849	0.47606	0.776393	0	0.698292	0.359289	0.499278	0.183194	0.589329	0	0.342304	0.417032	0.549758	0	0	0.306741	0	0.445105	0.613598	0.836283	1.55781	0.271965	0	0.381333	0.539789
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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