TCONS_00040353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040353
Unique NameTCONS_00040353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040353 ID=TCONS_00040353|Name=TCONS_00040353|organism=Clytia hemisphaerica|type=transcript|length=347bp
CAagaatttacgatttttttggatTGTGAAATAAAATCTCGTGGAACTTG
ATCCGAAAAAAACCGTTAAAAATAATGAAGCTTACTCTCTTGCTTTTGCG
TTCTGTCaaagaaaacatcaaaatcCTGATCACTGAGAGGCTTATTGCAA
ACAGCTTTGCATTCATCAAAGCTTCCCTTCTTGTTTTGAAACAACAAGTC
TTTGATGATGACACCTCCAGCCTCATGGAAAATATCTGATGCCCAAACTT
TCACATTGTGTTTTTCACGAGGTATATCTTGGTGTTGTTTGGCCATTTGT
TGGCCATCGAAGtggatgtaaaaataatagtttTCGTCCGCTTCcta
Run BLAST on NCBI

transcript from alignment at sc0002396:3192..3538

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040353 ID=TCONS_00040353|Name=TCONS_00040353|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at sc0002396:3192..3538 (Clytia hemisphaerica)
tagGAAGCGGACGAaaactattatttttacatccaCTTCGATGGCCAACA
AATGGCCAAACAACACCAAGATATACCTCGTGAAAAACACAATGTGAAAG
TTTGGGCATCAGATATTTTCCATGAGGCTGGAGGTGTCATCATCAAAGAC
TTGTTGTTTCAAAACAAGAAGGGAAGCTTTGATGAATGCAAAGCTGTTTG
CAATAAGCCTCTCAGTGATCAGgattttgatgttttctttGACAGAACGC
AAAAGCAAGAGAGTAAGCTTCATTATTTTTAACGGTTTTTTTCGGATCAA
GTTCCACGAGATTTTATTTCACAatccaaaaaaatcgtaaattctTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024516XLOC_024516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040353-exon-sc0002396-1491911889:3192..3538TCONS_00040353-exon-sc0002396-1491911889:3192..3538Clytia hemisphaericaexon
TCONS_00040353-exon-sc0002396-1510915933:3192..3538TCONS_00040353-exon-sc0002396-1510915933:3192..3538Clytia hemisphaericaexon
TCONS_00040353-exon-sc0002396-1575043694:3192..3538TCONS_00040353-exon-sc0002396-1575043694:3192..3538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002396supercontigsc0002396:3192..3538 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
134.961	133.933	93.0792	78.3884	5.54708	8.28987	2.31366	6.49806	8.70828	13.8769	8.14358	10.5059	50.734	44.9672	0.299682	0	29.3815	52.6082	45.1406	111.993	59.6999	67.4903	49.0956	45.7719	20.9775	30.5788	10.3118	8.51381	9.99969	8.85932
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top