TCONS_00040350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040350
Unique NameTCONS_00040350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040350 ID=TCONS_00040350|Name=TCONS_00040350|organism=Clytia hemisphaerica|type=transcript|length=457bp
AATCTTTCAAGACACGGTTGAGCTTACAGCAAACCGCCCTGGACGAGATC
AAGGCGAAGAATCAAACGACGAAATCGTTGAGCTGCAACCAGGAGGCCGC
CCAACAGAACGCCCTAAATATGAACCCGACTTTGTAGAACTAAAAGGTGA
CGCCCCAAAAGTGTCAAAAGAGTCCGAAGTAATTGTGGAGCCGGAAGACT
TTTATGTAAGACCACGCCTGACAGAGGAGCCTCTCGTGCTTGAAGACGAA
CCCGATGAAAAAAggaaagCAAAGAATGAGAAACGATTATATGGTGGCTA
CGAACACTTGAACGGTCGAATCGGCCCAGTAAGACTTTCCGGTAAGAAAT
CATTCACAATTGATGCCATTCAGCAGATTACAGTAGAATCTCCATAGCTC
AAACGTGTACAGGGAAATATAATTTGTTCAGGTTATGGGAACCCCTTTGC
ATGGGTT
Run BLAST on NCBI

protein sequence of TCONS_00040350-protein

>TCONS_00040350-protein ID=TCONS_00040350-protein|Name=TCONS_00040350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
IFQDTVELTANRPGRDQGEESNDEIVELQPGGRPTERPKYEPDFVELKGD
APKVSKESEVIVEPEDFYVRPRLTEEPLVLEDEPDEKRKAKNEKRLYGGY
EHLNGRIGPVRLSGKKSFTIDAIQQITVESP
Run BLAST on NCBI

transcript from alignment at sc0002396:23785..24660-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040350 ID=TCONS_00040350|Name=TCONS_00040350|organism=Clytia hemisphaerica|type=transcript|length=876bp|location=Sequence derived from alignment at sc0002396:23785..24660- (Clytia hemisphaerica)
AATCTTTCAAGACACGGTTGAGCTTACAGCAAACCGCCCTGGACGAGATC
AAGGCGAAGAATCAAACGACGAAATCGTTGAGCTGCAACCAGGAGGCCGC
CCAACAGAACGCCCTAAATATGAACCCGACTTTGTAGAACTAAAAGGTGA
CGCCCCAAAAGTGTCAAAAGAGTCCGAAGTAATTGTGGAGCCGGAAGACT
TTTATGTAAGACCACGCCTGACAGAGGAGCCTCTCGTGCTTGAAGACGAA
CCCGATGAAAAAAGTATGAATCTTCAAATATTTCGCGATGATATATTTTC
GCTGCTGAAGCCTTACTAGTATATTCATGATATGCACCATTGCAATAGCT
GATTGGATGTAAGTGACGTAAAATCACTCAATACGTCACTTTCAACCAAT
CAGCCGTTGGGTCCACGGAAGACATTGCAATGGTGCATATCATGAATAAA
AAGATCCCTCTTGACTTATTATTGAATAAAGCCTTAGTAGTTACTACTTT
GATGGGATTGATTTTCGCGGATGAGACCAAAACCTGCGAGATTTAATCCA
CGCGAAAATCAATCCCATCAAAGTAGTAACTACTAAGGCTTTATTCAATT
GTTTCTCGATCATAAGTAAACTAGCAAAAATGTATTTAGAGTTTTTTTAT
GTTTTTTTAATTTGTCAGTTTATCATTTTTAGGGAAAGCAAAGAATGAGA
AACGATTATATGGTGGCTACGAACACTTGAACGGTCGAATCGGCCCAGTA
AGACTTTCCGGTAAGAAATCATTCACAATTGATGCCATTCAGCAGATTAC
AGTAGAATCTCCATAGCTCAAACGTGTACAGGGAAATATAATTTGTTCAG
GTTATGGGAACCCCTTTGCATGGGTT

Coding sequence (CDS) from alignment at sc0002396:23785..24660-

>TCONS_00040350 ID=TCONS_00040350|Name=TCONS_00040350|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0002396:23785..24660- (Clytia hemisphaerica)
GGAAAGCAAAGAATGAGAAACGATTATATGGTGGCTACGAACACTTGAAC
GGTCGAATCGGCCCAGTAAGACTTTCCGGTAAGAAATCATTCACAATTGA
TGCCATTCAGCAGATTACAGTAGAATCTCCATAGATCTTTCAAGACACGG
TTGAGCTTACAGCAAACCGCCCTGGACGAGATCAAGGCGAAGAATCAAAC
GACGAAATCGTTGAGCTGCAACCAGGAGGCCGCCCAACAGAACGCCCTAA
ATATGAACCCGACTTTGTAGAACTAAAAGGTGACGCCCCAAAAGTGTCAA
AAGAGTCCGAAGTAATTGTGGAGCCGGAAGACTTTTATGTAAGACCACGC
CTGACAGAGGAGCCTCTCGTGCTTGAAGACGAACCCGATGAAAAAAGGAA
AGCAAAGAATGAGAAACGATTATATGGTGGCTACGAACACTTGAACGGTC
GAATCGGCCCAGTAAGACTTTCCGGTAAGAAATCATTCACAATTGATGCC
ATTCAGCAGATTACAGTAGAATCTCCATAGATCTTTCAAGACACGGTTGA
GCTTACAGCAAACCGCCCTGGACGAGATCAAGGCGAAGAATCAAACGACG
AAATCGTTGAGCTGCAACCAGGAGGCCGCCCAACAGAACGCCCTAAATAT
GAACCCGACTTTGTAGAACTAAAAGGTGACGCCCCAAAAGTGTCAAAAGA
GTCCGAAGTAATTGTGGAGCCGGAAGACTTTTATGTAAGACCACGCCTGA
CAGAGGAGCCTCTCGTGCTTGAAGACGAACCCGATGAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024513XLOC_024513Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040350-proteinTCONS_00040350-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040350-exon-sc0002396-1575043694:24398..24660TCONS_00040350-exon-sc0002396-1575043694:24398..24660Clytia hemisphaericaexon
TCONS_00040350-exon-sc0002396-1575043694:23785..23978TCONS_00040350-exon-sc0002396-1575043694:23785..23978Clytia hemisphaericaexon
TCONS_00040350-exon-sc0002396-1510915933:24398..24660TCONS_00040350-exon-sc0002396-1510915933:24398..24660Clytia hemisphaericaexon
TCONS_00040350-exon-sc0002396-1510915933:23785..23978TCONS_00040350-exon-sc0002396-1510915933:23785..23978Clytia hemisphaericaexon
TCONS_00040350-exon-sc0002396-1491911889:24398..24660TCONS_00040350-exon-sc0002396-1491911889:24398..24660Clytia hemisphaericaexon
TCONS_00040350-exon-sc0002396-1491911889:23785..23978TCONS_00040350-exon-sc0002396-1491911889:23785..23978Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002396supercontigsc0002396:23785..24660 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.161975	0	1.73626	1.21957	4.96585	9.16492	63.4076	66.1323	32.5978	51.4424	1.1417	1.54074	0.162463	0.104072	0	0	0.608284	0	0	0.202394	0.201283	0.149122	0.767961	1.91908	0	0	0	0.485316
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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