|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040347 ID=TCONS_00040347|Name=TCONS_00040347|organism=Clytia hemisphaerica|type=transcript|length=2158bp
TAATATCGTTCATAGATTTCCTTTCGCTGCAGTTTAATCTCTGTTTTACT
CAGCTTGATTTCTTTATTTGTTGGACCAATCACTAGCTTCCTGTCTAAAA
AGGTTTGTGTATGACCATAAAGAGGTTGTTCATAACGGCTTAACTTCTCT
TTTGCATCGTCAAGGTATTCATGAAAAAACTTGTCTAGCTTGTTTTGTTC
ATACGCCTTctgcaatttcttttttgtgtACAGTTTTGAACAAATTGAAG
TGACATATGGATCATCACCTGCATATATCTCATACTTTAAAATTTGTTGA
TAAATTCCAAATAACACGATAGCATTACTGTTAAGTGATATATCTATATT
TGGATAATCAGGTTGAACCTCTTTAAAGCCAAAAACATTACCAATGTTTG
AATCCATGTACCCCTGTTGAACGGCATGAGAAGGCAATAAATCCAAAATA
CATGCCCTTGAAAGGTTAGCGACATGAGTAGTTGGTAATACACAGTTCCC
TTTATGTTTGCTCCAATGTCTGGTTTGGCATTCTTTGGAGCAGTAGTTAG
CTAACTTACATTTAGAGCATTTAAATGAAGAATCTTTATAGCATATGTCA
CATTCGTTCATTATTTTATTTGTTATCTATACATATGAAACTATATAAAA
CACACTTAAAACATGTAAAAATCCAGTGTTGGTATCTTTTAAATGTGTTT
AATTGTTGTGTTTGTACAGTATATGGGATGGATATTTTTTAATCTATTCG
ATTGACATCACCTGGATGAAGCTAAAGGCGGCCTAGCTTAATGTTAGATT
TTGTTTCTTTAATTATTTCAACGGTAAACACATGAACATTGTGTTCATAA
AAGAAGAAGAGCCACCAAACGATGAGAGTTTTCCCTTTCTAGATGCAAAA
ATCATGAAGCTGAGAGCAAAATTTGTCACTAGCACACATTACAAACCTAC
CCACACTGGCCTATTCACTAATTGGTACAACTTTACCCCTAGAAAGTGCA
AACTTAATTTGGTTAAGAATCTTCAAAATAGAGCCTGGAATGGAGCCTGT
TCCAATAAAAAGCTTTTCGAGAAAGATAAGGATGTGATAAAAGGGAACCT
TTTGAGGAACAAGTTTCCTGAAAAAGTACTGAAGTTGGTAGCAGATGGTT
TTGTAAGGAAAAGGAATTGGTACAGGATGAGACTGTTGTCATGACTGTTC
CAAAGAAGGAAGTTTCTCTGACTTTACCATTTCTTGGTAACTTGTCTGAA
GTTTTAAAGAAACGTATATTGGTATTGTTTAGGGTTACATACCCACAAAA
TTGATCTTTTTAAGGTCAAGTTTTGCACCATTTTTCGGATTGCATTGTTT
AATTTCAAAGATGAAATACCATTAATAACATTTTTTTTCTTGGATTGTAT
ATGAAATGCACTGCACAAATTGCAATTCTTTTTACGTGGATAAGACCAAA
AGACATGCCACCATTAGGTACAAAAAGCATTGCATTCCCAAAAACCCCTC
TGCAGTTACGAATCACATAATCACTCAAAATCATGATTTCTCCCTAGATA
GCCATATTTTAGTACATTACATTGTACTAACTTATCTCTACGACCAGATT
TTTGATACCACCCTTTCAGTACACTTTACTGTCTTTTCTCAATTTAACAG
GATTTTTGAAACCACCCTTTTAGTACACTGTACTCAGCTGTACTAGCTGT
TGGCGTACTGTGCAGCCAGGACCCGGACCGGACCCTAAGAAGACCCTGGA
CCCTAAGAAAACCCGGACCCCGGATCTTTATGAAAACCCCGACCCTTCGT
AAATTTTGGCAAAAACATGGACCCCCTCAAACTTTTTCGGCCTACACAGC
TTTTTGCGCAATGCAATTGGTTCTTTTCGCATGACGACGGGCCTACACTG
CACAGAGTTGCCCGTCGGTAGGAAAATTCATTGTGACGTCACTTTTTTCA
AAGGAAAATGAACACTGCGTGGACATCATTTGTCTCATTTTTCATTTTTG
ACGTCAGTAATTAAAACAATTTTGGATTTCTTTTCGCTTGTATTTTCGCT
ATTTTTATCTGGATAAAGAACAAAAAAAAACGGAAAAAAAAGAAAACGGT
TAACAAATACAATAATGACCGGTTTTTTCGGGCTTTACTGTGAAATATTG
CCCtaggt Run BLAST on NCBI protein sequence of TCONS_00040347-protein >TCONS_00040347-protein ID=TCONS_00040347-protein|Name=TCONS_00040347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MNECDICYKDSSFKCSKCKLANYCSKECQTRHWSKHKGNCVLPTTHVANL
SRACILDLLPSHAVQQGYMDSNIGNVFGFKEVQPDYPNIDISLNSNAIVL
FGIYQQILKYEIYAGDDPYVTSICSKLYTKKKLQKAYEQNKLDKFFHEYL
DDAKEKLSRYEQPLYGHTQTFLDRKLVIGPTNKEIKLSKTEIKLQRKEIY
ERY Run BLAST on NCBI transcript from alignment at sc0002394:21266..23423 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040347 ID=TCONS_00040347|Name=TCONS_00040347|organism=Clytia hemisphaerica|type=transcript|length=2158bp|location=Sequence derived from alignment at sc0002394:21266..23423 (Clytia hemisphaerica)
acctaGGGCAATATTTCACAGTAAAGCCCGAAAAAACCGGTCATTATTGT
ATTTGTTAACCGTTTTCTTTTTTTTCCGTTTTTTTTTGTTCTTTATCCAG
ATAAAAATAGCGAAAATACAAGCGAAAAGAAATCCAAAATTGTTTTAATT
ACTGACGTCAAAAATGAAAAATGAGACAAATGATGTCCACGCAGTGTTCA
TTTTCCTTTGAAAAAAGTGACGTCACAATGAATTTTCCTACCGACGGGCA
ACTCTGTGCAGTGTAGGCCCGTCGTCATGCGAAAAGAACCAATTGCATTG
CGCAAAAAGCTGTGTAGGCCGAAAAAGTTTGAGGGGGTCCATGTTTTTGC
CAAAATTTACGAAGGGTCGGGGTTTTCATAAAGATCCGGGGTCCGGGTTT
TCTTAGGGTCCAGGGTCTTCTTAGGGTCCGGTCCGGGTCCTGGCTGCACA
GTACGCCAACAGCTAGTACAGCTGAGTACAGTGTACTAAAAGGGTGGTTT
CAAAAATCCTGTTAAATTGAGAAAAGACAGTAAAGTGTACTGAAAGGGTG
GTATCAAAAATCTGGTCGTAGAGATAAGTTAGTACAATGTAATGTACTAA
AATATGGCTATCTAGGGAGAAATCATGATTTTGAGTGATTATGTGATTCG
TAACTGCAGAGGGGTTTTTGGGAATGCAATGCTTTTTGTACCTAATGGTG
GCATGTCTTTTGGTCTTATCCACGTAAAAAGAATTGCAATTTGTGCAGTG
CATTTCATATACAATCCAAGAAAAAAAATGTTATTAATGGTATTTCATCT
TTGAAATTAAACAATGCAATCCGAAAAATGGTGCAAAACTTGACCTTAAA
AAGATCAATTTTGTGGGTATGTAACCCTAAACAATACCAATATACGTTTC
TTTAAAACTTCAGACAAGTTACCAAGAAATGGTAAAGTCAGAGAAACTTC
CTTCTTTGGAACAGTCATGACAACAGTCTCATCCTGTACCAATTCCTTTT
CCTTACAAAACCATCTGCTACCAACTTCAGTACTTTTTCAGGAAACTTGT
TCCTCAAAAGGTTCCCTTTTATCACATCCTTATCTTTCTCGAAAAGCTTT
TTATTGGAACAGGCTCCATTCCAGGCTCTATTTTGAAGATTCTTAACCAA
ATTAAGTTTGCACTTTCTAGGGGTAAAGTTGTACCAATTAGTGAATAGGC
CAGTGTGGGTAGGTTTGTAATGTGTGCTAGTGACAAATTTTGCTCTCAGC
TTCATGATTTTTGCATCTAGAAAGGGAAAACTCTCATCGTTTGGTGGCTC
TTCTTCTTTTATGAACACAATGTTCATGTGTTTACCGTTGAAATAATTAA
AGAAACAAAATCTAACATTAAGCTAGGCCGCCTTTAGCTTCATCCAGGTG
ATGTCAATCGAATAGATTAAAAAATATCCATCCCATATACTGTACAAACA
CAACAATTAAACACATTTAAAAGATACCAACACTGGATTTTTACATGTTT
TAAGTGTGTTTTATATAGTTTCATATGTATAGATAACAAATAAAATAATG
AACGAATGTGACATATGCTATAAAGATTCTTCATTTAAATGCTCTAAATG
TAAGTTAGCTAACTACTGCTCCAAAGAATGCCAAACCAGACATTGGAGCA
AACATAAAGGGAACTGTGTATTACCAACTACTCATGTCGCTAACCTTTCA
AGGGCATGTATTTTGGATTTATTGCCTTCTCATGCCGTTCAACAGGGGTA
CATGGATTCAAACATTGGTAATGTTTTTGGCTTTAAAGAGGTTCAACCTG
ATTATCCAAATATAGATATATCACTTAACAGTAATGCTATCGTGTTATTT
GGAATTTATCAACAAATTTTAAAGTATGAGATATATGCAGGTGATGATCC
ATATGTCACTTCAATTTGTTCAAAACTGTacacaaaaaagaaattgcagA
AGGCGTATGAACAAAACAAGCTAGACAAGTTTTTTCATGAATACCTTGAC
GATGCAAAAGAGAAGTTAAGCCGTTATGAACAACCTCTTTATGGTCATAC
ACAAACCTTTTTAGACAGGAAGCTAGTGATTGGTCCAACAAATAAAGAAA
TCAAGCTGAGTAAAACAGAGATTAAACTGCAGCGAAAGGAAATCTATGAA
CGATATTA Coding sequence (CDS) from alignment at sc0002394:21266..23423 >TCONS_00040347 ID=TCONS_00040347|Name=TCONS_00040347|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0002394:21266..23423 (Clytia hemisphaerica)
ATGAACGAATGTGACATATGCTATAAAGATTCTTCATTTAAATGCTCTAA
ATGTAAGTTAGCTAACTACTGCTCCAAAGAATGCCAAACCAGACATTGGA
GCAAACATAAAGGGAACTGTGTATTACCAACTACTCATGTCGCTAACCTT
TCAAGGGCATGTATTTTGGATTTATTGCCTTCTCATGCCGTTCAACAGGG
GTACATGGATTCAAACATTGGTAATGTTTTTGGCTTTAAAGAGGTTCAAC
CTGATTATCCAAATATAGATATATCACTTAACAGTAATGCTATCGTGTTA
TTTGGAATTTATCAACAAATTTTAAAGTATGAGATATATGCAGGTGATGA
TCCATATGTCACTTCAATTTGTTCAAAACTGTacacaaaaaagaaattgc
agAAGGCGTATGAACAAAACAAGCTAGACAAGTTTTTTCATGAATACCTT
GACGATGCAAAAGAGAAGTTAAGCCGTTATGAACAACCTCTTTATGGTCA
TACACAAACCTTTTTAGACAGGAAGCTAGTGATTGGTCCAACAAATAAAG
AAATCAAGCTGAGTAAAACAGAGATTAAACTGCAGCGAAAGGAAATCTAT
GAACGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040347-exon-sc0002394-1491911889:21266..23423 | TCONS_00040347-exon-sc0002394-1491911889:21266..23423 | Clytia hemisphaerica | exon |
| TCONS_00040347-exon-sc0002394-1510915933:21266..23423 | TCONS_00040347-exon-sc0002394-1510915933:21266..23423 | Clytia hemisphaerica | exon |
| TCONS_00040347-exon-sc0002394-1575043694:21266..23423 | TCONS_00040347-exon-sc0002394-1575043694:21266..23423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002394 | supercontig | sc0002394:21266..23423 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
|
