TCONS_00040345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040345
Unique NameTCONS_00040345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040345 ID=TCONS_00040345|Name=TCONS_00040345|organism=Clytia hemisphaerica|type=transcript|length=409bp
CAAATCTAGAGATGAAAGTGGCCAAAAATAAGCCTAGACCGTTGTGTCCG
tctttcatttttaagattgaaaCTGTTCAgacaatttatcaaaatattca
acttcaaaaagtATTGATTAGCTAATCAAGCATATTGCAAGAAAAAAGAA
CTTTAACAGAAATTGAAACCTTATTGTGGATATTTTTTGTACTCTGCTTA
TATAGAAGTAATGCTGCTATTTTCCTTTCTATTACGTACCAGCAAAAAAT
CCAGCTAGTTTTCTTTGTGTTGTGCATAGTGACagtaaaaatttatcaaa
agatgaagaacaaaacagaaaaatatttataccgtattacttcgaattaG
GCCCAGGgagtttattgaatttttttttattttaggagaggcgtttattt
gagggggcg
Run BLAST on NCBI

transcript from alignment at sc0002394:18068..18476

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040345 ID=TCONS_00040345|Name=TCONS_00040345|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at sc0002394:18068..18476 (Clytia hemisphaerica)
cgccccctcaaataaacgcctctcctaaaataaaaaaaaattcaataaac
tcCCTGGGCCtaattcgaagtaatacggtataaatatttttctgttttgt
tcttcatcttttgataaatttttactGTCACTATGCACAACACAAAGAAA
ACTAGCTGGATTTTTTGCTGGTACGTAATAGAAAGGAAAATAGCAGCATT
ACTTCTATATAAGCAGAGTACAAAAAATATCCACAATAAGGTTTCAATTT
CTGTTAAAGTTCTTTTTTCTTGCAATATGCTTGATTAGCTAATCAATact
ttttgaagttgaatattttgataaattgtcTGAACAGtttcaatcttaaa
aatgaaagaCGGACACAACGGTCTAGGCTTATTTTTGGCCACTTTCATCT
CTAGATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024508XLOC_024508Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040345-exon-sc0002394-1491911889:18068..18476TCONS_00040345-exon-sc0002394-1491911889:18068..18476Clytia hemisphaericaexon
TCONS_00040345-exon-sc0002394-1510915933:18068..18476TCONS_00040345-exon-sc0002394-1510915933:18068..18476Clytia hemisphaericaexon
TCONS_00040345-exon-sc0002394-1575043694:18068..18476TCONS_00040345-exon-sc0002394-1575043694:18068..18476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002394supercontigsc0002394:18068..18476 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.532166	0.172982	0.602546	2.55449	0	0	0.456122	0	0.149482	0.185158	0	0	0	0	0.100727	0.108096	0	0.27298	0.188568	0	0.514528	0	0	0.184911	0	0	0.729705	0.259587	0.196888	0.200597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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