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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040344 ID=TCONS_00040344|Name=TCONS_00040344|organism=Clytia hemisphaerica|type=transcript|length=2321bp
TGTTTTAAttctttatcaggattttagtgcaaaatttctttggttcaacg
actaaaaatcgaaaactgctctggttacaagaaatgactaaaatcttcct
tttcaaacccaaACAACACTGCTACtgaagtattaaagtcacatgtttct
aataaacgcccctctccTAGAGCAGGCGTTCATTCGAAGGggtgtttatt
tgagggggtgtttattaaataattttcatatATTCGAtggggtgtttatt
cgaagtaatatggTATCACTgtaacattttctttttatctacttttttaa
ttttcttcttttttttatcaagTTTGATTCCTGAAAAATGGGAAGTGTAT
AATATGCCTTGATTTTAAGGTGAGAATTTAATTTCGATGacagcaaaaat
aaaattttaattgaaactAAATTTAGCAGATCTACAAAATTCTAATGTCC
TGTTTTCATCTTATTTTAAAGTTATGCATGCCTTCTTTTTTGGTGTGCCC
CAATATGTAAATACACAAAAAGATTTCTTACCAGCAGATTCCATTCTGTT
TGCTAAAACAACATCATTTGACCAGACATCAAATCTTCGTCTGCGATCAC
CTACAATACCACAAAGAACATTACCAGTATGAATTCCAACCCTCATGTCG
ACATCTTCCTTCGTTTCTTGACAGAAGTTCTTAATTTCTTCTATAATATC
TAGTCCCATTTCAACGCAAGAAATAGCATGGTGCTCAGATTCCTCTGGAC
AGCCTGCAACACAGTAATAACAATCACCAAGTGTACTGATCTTTTCACAC
TTATTTATTTCTGTCAATTCATCAAACTTCCCAAAAAGAAGATTTAACAA
GTGAACAAGATGATCTGCTTCCTTTTTTGCAGACATTTTAGTGAAACCAA
CAATATCAGCAAAAAGAATGCTCACATTAGCCATCTTGTACATTGTAAAT
GGTCTAAAAGCAACACTCTTCTGCCGCAAACCatcttttggcattttctc
TTGAATGAGATACTCAGCAACTTTCTTAGGCATGACAGATTTAATCATCC
TATTTTTCACTTGTTGTTCAATGTCTAAATCTTGTTTTGCAACAACACTC
TGCCCAACTCTCCAAAATGTACTACGTCTACGAATTtgagccataaaaac
aatgctTATACCAAGTGCATGAATACAAATATGTAATAAGATAATCCCAG
CAATTACTTCAGCATTTCTATTTGAGTCTTTCATTGATGCTGAAACCTCA
TGGGCAATTGAGAACGCTAAAGCCATTATTGCACTTCCATACACAGGCAC
TGCTGGCATCATTGTGTAAATTACAATAATTATACACGTAGCAAGTCCAA
ATCTAGCACTGTATGATAAATATTCTTGGTCCACCACATGAAAAGAAGCT
ACTTCAATAGCACTATACAAAAGTGAAACAACAATGGAAAGTGTTCTAGC
TTGAATTGCTTTGTTATAAAATCTTACAAATTTTGTGAGCAGCAAAATAC
AAATAGCAATGAGTGCAGCAACTGCTGATCCAATTGATAGTTCTTGTTGA
ACGGCAGAGTCATCTCTACTGGCACCAAAATAAATTGCTAAGATGGCAAA
TGCAAATGCAAAGTATGTTAATCCAAGTTGAAATCTACTTTTATCAACAT
TGACACTGAATCGTTGGAATTCTGTCTCTAGTGTATCTGAATCAAAACTG
GGGTTTAGTAAATTACCAGATGCTCTCTCAAAAAACAGTGGGATTATCCC
TTTTCTGACTCTTTTATCCACTATAGAGCTAAATGATGGTTTATCTTCAG
GACGTCCATTAGCCTGAGGTGTCTCCATTTCTTTGCTATTTGAGCTCCTT
CTCAAGCAACAAGTATCAGTGTCTTTGCTGTGAGTTGATTCGTCTGATGA
AGTGTCTGCTGAATTATTTTGTGATAGTTTCCCATTTGTTTCAAAATGCA
TGATCTAAATTGGTGTTCACACTGTTGTGATGAAAGTTAACAGTGAGAGG
GATCtttaaaaatcagaaataacTTTCACTCTTCATTCATATCTTcctct
ttttttcctttctctgttcttttcttcttttttttattcaatttctaAGC
ACAACATGACATTGCGATATTTTGCAACTAGCTAAAGACATCAAAATCTT
AGTATAGTTTCTTTAGTTTTCTATAAGTAGAAAAATAACATTTAAATCGT
TTACAAAAACCATCCTTGGCCAATTTTAGAATTAATCCAGTCAATACTGT
CAAATCAAAGTGTCAGCATTTTTGTCGATTACTTGCTTCTCCTCTTTTTA
GAACTCACCCTCCATCCAGAG Run BLAST on NCBI protein sequence of TCONS_00040344-protein >TCONS_00040344-protein ID=TCONS_00040344-protein|Name=TCONS_00040344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MHFETNGKLSQNNSADTSSDESTHSKDTDTCCLRRSSNSKEMETPQANGR
PEDKPSFSSIVDKRVRKGIIPLFFERASGNLLNPSFDSDTLETEFQRFSV
NVDKSRFQLGLTYFAFAFAILAIYFGASRDDSAVQQELSIGSAVAALIAI
CILLLTKFVRFYNKAIQARTLSIVVSLLYSAIEVASFHVVDQEYLSYSAR
FGLATCIIIVIYTMMPAVPVYGSAIMALAFSIAHEVSASMKDSNRNAEVI
AGIILLHICIHALGISIVFMAQIRRRSTFWRVGQSVVAKQDLDIEQQVKN
RMIKSVMPKKVAEYLIQEKMPKDGLRQKSVAFRPFTMYKMANVSILFADI
VGFTKMSAKKEADHLVHLLNLLFGKFDELTEINKCEKISTLGDCYYCVAG
CPEESEHHAISCVEMGLDIIEEIKNFCQETKEDVDMRVGIHTGNVLCGIV
GDRRRRFDVWSNDVVLANRMESAGKKSFCVFTYWGTPKKKACITLK Run BLAST on NCBI transcript from alignment at sc0002394:15630..17950 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040344 ID=TCONS_00040344|Name=TCONS_00040344|organism=Clytia hemisphaerica|type=transcript|length=2321bp|location=Sequence derived from alignment at sc0002394:15630..17950 (Clytia hemisphaerica)
CTCTGGATGGAGGGTGAGTTCTAAAAAGAGGAGAAGCAAGTAATCGACAA
AAATGCTGACACTTTGATTTGACAGTATTGACTGGATTAATTCTAAAATT
GGCCAAGGATGGTTTTTGTAAACGATTTAAATGTTATTTTTCTACTTATA
GAAAACTAAAGAAACTATACTAAGATTTTGATGTCTTTAGCTAGTTGCAA
AATATCGCAATGTCATGTTGTGCTtagaaattgaataaaaaaaagaagaa
aagaacagagaaaggaaaaaaagaggAAGATATGAATGAAGAGTGAAAgt
tatttctgatttttaaaGATCCCTCTCACTGTTAACTTTCATCACAACAG
TGTGAACACCAATTTAGATCATGCATTTTGAAACAAATGGGAAACTATCA
CAAAATAATTCAGCAGACACTTCATCAGACGAATCAACTCACAGCAAAGA
CACTGATACTTGTTGCTTGAGAAGGAGCTCAAATAGCAAAGAAATGGAGA
CACCTCAGGCTAATGGACGTCCTGAAGATAAACCATCATTTAGCTCTATA
GTGGATAAAAGAGTCAGAAAAGGGATAATCCCACTGTTTTTTGAGAGAGC
ATCTGGTAATTTACTAAACCCCAGTTTTGATTCAGATACACTAGAGACAG
AATTCCAACGATTCAGTGTCAATGTTGATAAAAGTAGATTTCAACTTGGA
TTAACATACTTTGCATTTGCATTTGCCATCTTAGCAATTTATTTTGGTGC
CAGTAGAGATGACTCTGCCGTTCAACAAGAACTATCAATTGGATCAGCAG
TTGCTGCACTCATTGCTATTTGTATTTTGCTGCTCACAAAATTTGTAAGA
TTTTATAACAAAGCAATTCAAGCTAGAACACTTTCCATTGTTGTTTCACT
TTTGTATAGTGCTATTGAAGTAGCTTCTTTTCATGTGGTGGACCAAGAAT
ATTTATCATACAGTGCTAGATTTGGACTTGCTACGTGTATAATTATTGTA
ATTTACACAATGATGCCAGCAGTGCCTGTGTATGGAAGTGCAATAATGGC
TTTAGCGTTCTCAATTGCCCATGAGGTTTCAGCATCAATGAAAGACTCAA
ATAGAAATGCTGAAGTAATTGCTGGGATTATCTTATTACATATTTGTATT
CATGCACTTGGTATAagcattgtttttatggctcaAATTCGTAGACGTAG
TACATTTTGGAGAGTTGGGCAGAGTGTTGTTGCAAAACAAGATTTAGACA
TTGAACAACAAGTGAAAAATAGGATGATTAAATCTGTCATGCCTAAGAAA
GTTGCTGAGTATCTCATTCAAgagaaaatgccaaaagatGGTTTGCGGCA
GAAGAGTGTTGCTTTTAGACCATTTACAATGTACAAGATGGCTAATGTGA
GCATTCTTTTTGCTGATATTGTTGGTTTCACTAAAATGTCTGCAAAAAAG
GAAGCAGATCATCTTGTTCACTTGTTAAATCTTCTTTTTGGGAAGTTTGA
TGAATTGACAGAAATAAATAAGTGTGAAAAGATCAGTACACTTGGTGATT
GTTATTACTGTGTTGCAGGCTGTCCAGAGGAATCTGAGCACCATGCTATT
TCTTGCGTTGAAATGGGACTAGATATTATAGAAGAAATTAAGAACTTCTG
TCAAGAAACGAAGGAAGATGTCGACATGAGGGTTGGAATTCATACTGGTA
ATGTTCTTTGTGGTATTGTAGGTGATCGCAGACGAAGATTTGATGTCTGG
TCAAATGATGTTGTTTTAGCAAACAGAATGGAATCTGCTGGTAAGAAATC
TTTTTGTGTATTTACATATTGGGGCACACCAAAAAAGAAGGCATGCATAA
CTTTAAAATAAGATGAAAACAGGACATTAGAATTTTGTAGATCTGCTAAA
TTTagtttcaattaaaattttatttttgctgtCATCGAAATTAAATTCTC
ACCTTAAAATCAAGGCATATTATACACTTCCCATTTTTCAGGAATCAAAc
ttgataaaaaaaagaagaaaattaaaaaagtagataaaaagaaaatgtta
cAGTGATAccatattacttcgaataaacaccccaTCGAATatatgaaaat
tatttaataaacaccccctcaaataaacaccCCTTCGAATGAACGCCTGC
TCTAggagaggggcgtttattagaaacatgtgactttaatacttcaGTAG
CAGTGTTGTttgggtttgaaaaggaagattttagtcatttcttgtaacca
gagcagttttcgatttttagtcgttgaaccaaagaaattttgcactaaaa
tcctgataaagaaTTAAAACA Coding sequence (CDS) from alignment at sc0002394:15630..17950 >TCONS_00040344 ID=TCONS_00040344|Name=TCONS_00040344|organism=Clytia hemisphaerica|type=CDS|length=1491bp|location=Sequence derived from alignment at sc0002394:15630..17950 (Clytia hemisphaerica)
ATGCATTTTGAAACAAATGGGAAACTATCACAAAATAATTCAGCAGACAC
TTCATCAGACGAATCAACTCACAGCAAAGACACTGATACTTGTTGCTTGA
GAAGGAGCTCAAATAGCAAAGAAATGGAGACACCTCAGGCTAATGGACGT
CCTGAAGATAAACCATCATTTAGCTCTATAGTGGATAAAAGAGTCAGAAA
AGGGATAATCCCACTGTTTTTTGAGAGAGCATCTGGTAATTTACTAAACC
CCAGTTTTGATTCAGATACACTAGAGACAGAATTCCAACGATTCAGTGTC
AATGTTGATAAAAGTAGATTTCAACTTGGATTAACATACTTTGCATTTGC
ATTTGCCATCTTAGCAATTTATTTTGGTGCCAGTAGAGATGACTCTGCCG
TTCAACAAGAACTATCAATTGGATCAGCAGTTGCTGCACTCATTGCTATT
TGTATTTTGCTGCTCACAAAATTTGTAAGATTTTATAACAAAGCAATTCA
AGCTAGAACACTTTCCATTGTTGTTTCACTTTTGTATAGTGCTATTGAAG
TAGCTTCTTTTCATGTGGTGGACCAAGAATATTTATCATACAGTGCTAGA
TTTGGACTTGCTACGTGTATAATTATTGTAATTTACACAATGATGCCAGC
AGTGCCTGTGTATGGAAGTGCAATAATGGCTTTAGCGTTCTCAATTGCCC
ATGAGGTTTCAGCATCAATGAAAGACTCAAATAGAAATGCTGAAGTAATT
GCTGGGATTATCTTATTACATATTTGTATTCATGCACTTGGTATAagcat
tgtttttatggctcaAATTCGTAGACGTAGTACATTTTGGAGAGTTGGGC
AGAGTGTTGTTGCAAAACAAGATTTAGACATTGAACAACAAGTGAAAAAT
AGGATGATTAAATCTGTCATGCCTAAGAAAGTTGCTGAGTATCTCATTCA
AgagaaaatgccaaaagatGGTTTGCGGCAGAAGAGTGTTGCTTTTAGAC
CATTTACAATGTACAAGATGGCTAATGTGAGCATTCTTTTTGCTGATATT
GTTGGTTTCACTAAAATGTCTGCAAAAAAGGAAGCAGATCATCTTGTTCA
CTTGTTAAATCTTCTTTTTGGGAAGTTTGATGAATTGACAGAAATAAATA
AGTGTGAAAAGATCAGTACACTTGGTGATTGTTATTACTGTGTTGCAGGC
TGTCCAGAGGAATCTGAGCACCATGCTATTTCTTGCGTTGAAATGGGACT
AGATATTATAGAAGAAATTAAGAACTTCTGTCAAGAAACGAAGGAAGATG
TCGACATGAGGGTTGGAATTCATACTGGTAATGTTCTTTGTGGTATTGTA
GGTGATCGCAGACGAAGATTTGATGTCTGGTCAAATGATGTTGTTTTAGC
AAACAGAATGGAATCTGCTGGTAAGAAATCTTTTTGTGTATTTACATATT
GGGGCACACCAAAAAAGAAGGCATGCATAACTTTAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040344-exon-sc0002394-1491911889:15630..17950 | TCONS_00040344-exon-sc0002394-1491911889:15630..17950 | Clytia hemisphaerica | exon |
| TCONS_00040344-exon-sc0002394-1510915933:15630..17950 | TCONS_00040344-exon-sc0002394-1510915933:15630..17950 | Clytia hemisphaerica | exon |
| TCONS_00040344-exon-sc0002394-1575043694:15630..17950 | TCONS_00040344-exon-sc0002394-1575043694:15630..17950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002394 | supercontig | sc0002394:15630..17950 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009190 | cyclic nucleotide biosynthetic process |
| GO:0035556 | intracellular signal transduction |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016849 | phosphorus-oxygen lyase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009190 |
cyclic nucleotide biosynthetic process |
| biological_process |
GO:0035556 |
intracellular signal transduction |
| molecular_function |
GO:0016849 |
phosphorus-oxygen lyase activity |
Blast
BLAST of TCONS_00040344 vs. Swiss-Prot (Human)
Match: ADCY9 (Adenylate cyclase type 9 OS=Homo sapiens GN=ADCY9 PE=1 SV=4) HSP 1 Score: 293.893 bits (751), Expect = 1.753e-84 Identity = 182/451 (40.35%), Postives = 254/451 (56.32%), Query Frame = -2
Query: 530 IPLFFERASGNLLNPSFDSDTLETEFQRFSVNVDKSRFQLGLTXXXXXXXXXXXXFGASRDDSAVQQELSIGSXXXXXXXXXXXXLTKFVRFYNKAIQARTLSIVVSLLYSAIEVASFHVV-------DQEYLSYSAR-----------FGLATCIIIVIYTMMPAVPVYGSAIMALAFSIAHEV-SASMKDSNRNAEVIAGII--------LLHICIHALGISIVFMAQIRRRSTFWRVGQSVVAKQDLDIEQQVKNRMIKSVMPKKVAEYLIQE-------------------KMPKDGLRQKSVAFRPFTMYKMANVSILFADIVGFTKMSAKKEADHLVHLLNLLFGKFDELTEINKCEKISTLGDCYYCVAGCPEESEHHAISCVEMGLDIIEEIKNFCQETKEDVDMRVGIHTGNVLCGIVGDRRRRFDVWSNDVVLANRMESAG 1744
+P FERAS +P FDS LE + RF+ L Y FA + +IYF + + + A+ L+ L F + Y + +L++ + L+++ A F V+ D L+ +AR F + ++ ++YT+M +P+Y S + +A+S+ E +D AG + LLH CIHA+G+ + M+Q+R RSTF +VGQS++ +DL++E+ +K RMI SVMP+ +A+ L+++ + K +++ +AFRPF M ++ VSILFADIVGFTKMSA K A LV LLN LFG+FD L E KCEKISTLGDCYYCVAGCPE HA C+EMGL +I+ I+ FCQE KE V+MRVG+HTG VLCGI+G RR +FDVWSNDV LAN ME G
Sbjct: 79 LPQLFERASSRWWDPKFDSVNLEEACLERCFPQTQRRFRYALFYIGFACLLWSIYFAVHMRSRLI---VMVAPALCFLLVCVGFFLFTFTKLYARHYAWTSLALTL-LVFALTLAAQFQVLTPVSGRGDSSNLTATARPTDTCLSQVGSFSMCIEVLFLLYTVM-HLPLYLSLCLGVAYSVLFETFGYHFRDEACFPSPGAGALHWELLSRGLLHGCIHAIGVHLFVMSQVRSRSTFLKVGQSIMHGKDLEVEKALKERMIHSVMPRIIADDLMKQGDEESENSVKRHATSSPKNRKKKSSIQKAPIAFRPFKMQQIEEVSILFADIVGFTKMSANKSAHALVGLLNDLFGRFDRLCEETKCEKISTLGDCYYCVAGCPEPRADHAYCCIEMGLGMIKAIEQFCQEKKEMVNMRVGVHTGTVLCGILGMRRFKFDVWSNDVNLANLMEQLG 524
The following BLAST results are available for this feature:
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