TCONS_00040337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040337
Unique NameTCONS_00040337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040337 ID=TCONS_00040337|Name=TCONS_00040337|organism=Clytia hemisphaerica|type=transcript|length=786bp
NCCCAAAACAAGACAATGGTTGCAGACTGACCAGACAACGTAACAATAAA
AGGGAGGAAATaaccaataaaaaaaaaaagataaatcctAAATATGATGA
AATCTAAATTAATTAAACGACTATATACAACTATCTAGCCACTGGTAGTT
CTATTGATATTCTTACTTGCCAATAACCTAGTAccattaaaaatgaagaa
gttacagaaaaagaaaaacacaaaaaaataaataacttgTGCCTGCAGCA
CGCCACCAAAGCACTGAGCGTTGTGAGAGGTAGTGACGAAAAAAACTTGC
CCTGTACCACGTTATCCAAGCAACTACCTGTCATAGTCTATTAGAAAACG
AACTCAGCCTGCGATATAATACAAACTATGATGATCTTGCCAGATTTCCA
GCCCACCATATTGAGGGCTGAAACCCAACTACCACCTAGCTATCTGGGAA
CCAGGTACCCCTAAATTCccttaaaatttcaattaaataaTTCCAGTCTA
AAGTAATACAATGAATGTAACTtaaaaatcttagaaaaatccctaggaaa
cgATAAAACCTATATCACACAATACACTCACACATCGACCTCAGAGTCAC
TTTTAGGGTTGAAACCAGACCGCCGTCAAGGTTTCTGAGAGAACCGAACC
GCCGTTCGAAATTCCCTCAAAGAAATGACTCCCCTTGAGTAGGACCCGAC
CTGAGACACTTTTAGGGTTGAAACCCGACCGCCGTCAAGGTTTCTGAGAG
AACCGAACCGCCGTTCGAAATTCCCTCAAAGGAGTG
Run BLAST on NCBI

transcript from alignment at sc0002393:22691..30203-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040337 ID=TCONS_00040337|Name=TCONS_00040337|organism=Clytia hemisphaerica|type=transcript|length=7513bp|location=Sequence derived from alignment at sc0002393:22691..30203- (Clytia hemisphaerica)
NCCCAAAACAAGACAATGGTTGCAGACTGACCAGACAACGTAACAATAAA
AGGGAGGAAATAACCAATAAAAAAAAAAAGATAAATCCTAAATATGATGA
AATCTAAATTAATTAAACGACTATATACAACTATCTAGCCACTGGTAGTT
CTATTGATATTCTTACTTGCCAATAACCTAGTACCATTAAAAATGAAGAA
GTTACAGAAAAAGAAAAACACAAAAAAATAAATAACTTGTGCCTGCAGCA
CGCCACCAAAGCACTGAGCGTTGTGAGAGGTAGTGACGAAAAAAACTTGC
CCTGTACCACGTTATCCAAGCAACTACCTGTCATAGTCTATTAGAAAACG
AACTCAGCCTGCGATATAATACAAACTATGATGATCTTGCCAGATTTCCA
GCCCACCATATTGAGGGCTGAAACCCAACTACCACCTAGCTATCTGGGAA
CCAGGTACCCCTAAATTCCCTTAAAATTTCAATTAAATAATTCCAGTCTA
AAGTAATACAATGAATGTAACTTAAAAATCTTAGAAAAATCCCTAGGAAA
CGATAAAACCTATATCACACAATACACTCACACATCGACCTCAGAGTCAC
TTTTAGGGTTGAAACCAGACCGCCGTCAAGGTTTCTGAGAGAACCGAACC
GCCGTTCGAAATTCCCTCAAAGAAATGACTCCCCTTGAGTAGGACCCGAC
CTGAGACACTTTTAGGGTTGAAACCCGACCGCCGTCAAGGTTTCTAAGAG
AACCAAACCGCCGTCTGAAATTCCCTCAAAGAAGTGACTCCCCTTGAGTA
GGACCCGACCTGAGACACTTTTAGGGTTGAAACCCGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATACCGCATGAATTTA
GCATAATTATTGACATAAACAGTGACGTCATGAGAAAAGTTTCAAAAAAA
TGTTTTCCCTCCTATTTTGATACGGTGCAAGTTTTTGCCATCTATAATGC
CAAATGAAACTTTCGCTCCTAGTGAATGGTGGTTGGACTGAGTGGGCAGC
ATGGGATGCATGTACTGCAACCTGTGGTACAGGGACACAAGCACGGACAA
GAACTTGTACAAACCCAACACCTGCTAATGGAGGAGATACTTGTACTGGA
GATGCATCGGAATCACAAGATTGCAATACCGAAACTTGTCCCGTCGAACC
AGGTAACTATTTTGTTAAACATCAAGAATTTAAGAAAACATCTCAAAAGT
TTTGCAAATGAATAAGTGACATATTTGAAGTGAGTTTCAAAGAGTCTTTG
CCAACTTTGCTCATTTCTTTTGCCTTTTGTGGTGGCACATGGGGAAAATC
CTCAATTTCAAAGTTAAGCTTGAAAGACTTCATGTAGGTTGATCTTGTCT
GGAAGCCGCTCGACCCCTCTCAAATCAAAGAATCCAATAAAACAAAGTGA
AATTACTGAAACTGCAATTCTTGCCCGAACCTTCAATTGTATAAAACGTT
AAGATAAACAAAATTGCCAATAAACTTCGGCACCGATTGTACAGATATCA
TTGTTAGCAGATACTGCATGAATTTAGAATAATTATTGACATAAATAGTG
ACTACATCAGAAAAGTTTCAAAGAAATGTTTTTTCCTCCTATTTTGATAC
GGTGCAAGTTTTTGCCATCTAAAATGCCAAATGAAACTTTCGCTCCTAGT
GAATGGTGGTTGGACNTTTGCCCGAACTGTTAATTCTATAAAACGTTAAG
ATAAACAAAATTGCCAATAAACTTCGGCACCGATTGTACAGATATCCTTG
TTAGCAGATACCGCATGAATTTAGCATAATTATTGACATAAACAGTGACG
TCATGAGAAAAGTTTCAAAAAAATGTTTTCCCTCCTATTTTGATAAGGTG
CAAGTTTTTGCCATCTATAATGCCAAATGAAACTTTCGCTCCTAGTGAAT
GATGGTTGGACTGAGTGGGCAGCATGGGATGCATGTACTGCAACCTGTGG
TACAGGGAAACAAGCACGGACAAGAACTTGTACAAATCCAACACCTGCTA
ACGGAGGAGATACTTGTACTGGAGATGCATCGGAATCACAAGATTGCAAT
ACCGAAACTTGTCCCGTCGAACCAGGTAACTATTTTGTTAAACATCAAGA
ATTTAAGAAAACATCTAAAAAGTTTTGCAAATGAATGAGTGACATATTTG
AAGTGAGATTCAAAGAGTCTTTGCCAACTTTGCTGATTTCTTTTGCCTTT
TGTGGTGGCACATGGGGAAAATCCTCAATTTCAAAGTTAAGCTTGAAAGA
CTTCATGTAGGTTGATCTTGTCTGGAAGCCGCTCGACCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTAGCAGATA
CCGCATGAATTTAGCATAATTATTGACATAAATAGTGACGTCATCAGAAA
AGTTTCAAAAAAATGTTTTCCCTCCTATTTTGATACGGTGAAAGTTTTTG
CCATCTATAATGCCGAATGAACTTTCGCTCCTAGTGAATGGTGGTTGGAC
TGAGTGGGCAGCATGGGATGCATGTACTGCAACCTGTGGTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTACCGAAACTTGTCCCGTCGAACCAGGTAACTATT
TTGTTAAACATCAAGAATTTAAGAAAACATCTCAAAAAAGTTTTGCAAAT
GAATGAGTGACGTATTTGAAGCGAGTTTCAAAGAATTTTTGCCAACTTTG
CTCATTTCTTTTGCCTTTTGTGGTGGCACATGGGGAAAATCCTCAATTTC
AAAGTTAAGCTTGAAAGACTTCATGTAGGTTGATCTTGTCTGGAAGCCGC
TCGACCCCTCTCAAATCAAAGAATCCAAAAAACAAATTACTGAAACTGCA
ATTCTTGCCCGAACTTTTAATTCTATAAAACGTTAAGATATCCAAAATTG
CCAATAAATTTCCGCACCGATTGTACAGATATCCTTGTTAGCAGATACCA
CATTAATTTAGCATAAGTATTGACATAAATAGTGACGTCATCATCAAAAG
TTTCAAAAAAATGTTTTTTCCTCCTATTTTGATACGGTGAAAGTTTTTGC
CATCTAAAATGCCAAATGAACTTTCGCTCCTAGTGAATGGTGGTTGGACT
GAGTGGGCAGCATGGGATGCATGTACTGCAACCTGTGGTACAGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTACTGCAACCTGTGGTACAGGGAC
ACAAGCACGGTCAAGAACTTGTACAAATCCAACACCTGCTAACGGAGGAG
ATACTTGTACTGGAGATGCATCGGAATCACAACATTGCAATACCGAAACT
TGTCCCGTCGAACCAGGTAACTATTTTGTTAAACATCGAGAATTTAAGAA
AACATCTCAAAAGTTTTGCAAATGAATGAGTGACGTATTTGAAGTGAGTT
TCAAAGAATCTTTGCCAACTTTGCTCATTTCTTTTGCCTTTTGTGGTGGC
ACATGGGGAAAATCCTCAATTTCAAATTTAAGCTTGAAAGACTTCATGTA
GGTTCATCTTGTCTGGAAGCCGCTCGACCCCTCTCAAATCAAAGAATCCA
ATAAAACAAATTACTGAAACTGCAATTCTTGCCCGAACTTTTAATTCTAT
AAAACGTTAAGATATCCAAAATTGCCAATAAACTTCGGCACCGATTGTAC
AGATATCTTTGTTAGCAGATACCGCATGAATTTAGCATAATTATTGACAT
AAATAGTGACGTCATCAGTAAAGTTTCAAAAAAATGTTTTTTCCTCCTAT
TTTGATACGGTGCAAGTTTTTGCCATCTAAAATGCCAAATGAACTTTCGC
TCCTAGTGAATGGTGGTTGNNGTGTTAAACATCAAAAATTTAAGAAAACA
TCTCAAAAGTTTTGCAAATGAATGAGTGACGTATTTGAAGTGAGTTTCAA
AGAATCTTTGCCAACTTTGCTCATTTCTTTTGCCTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAACACAGT
GAAATCACTGAAACTGCAATTCTTGCCCGAACTTTTAATTCTATAAAACG
TTAAGATATCCAAAATTTCCAATAAATTTCGGCACCGATTGTACAGATAT
CCTTGTCAGCAGATACAACATGATTTTAGCATAATTGTTGACATAAATAG
TGACGTCATCAGTAAAGTTTCAAAAAAATGTTTTTTCCTCCTATTTTGAT
ACGGTGCAAGTTTTTGCCATCTAAAATGCCAAATGAACTTTCTCTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAGAA
ATTAAAACGATATATATTTCCCGTTTATAAGAATAGCAAACAGGGAGAAA
ATAACCCTACATAGGGTTTACAGCTAATAATGGCGATAGCCTACCCATCT
GCGGTATTCAAAAATAACTATCTCTGCCCGTCTTTGTGTATTATCTCCAT
ACTACTGGGCCACTTTAATCCTGTCATCAGTCTATAAAAAAAGCTTTGAG
TGGACCCCGGGCTAGATCTTTGCATGATTAAATCTTTCTTTTTGTTTTCA
TATTAAATCTGTGTTTAATTTCCAAATTCGTTCATCTGTTTGGAGGGGAG
TAGAATAGATTGAGACATTTTTCAATTAAGTTTGGCGTTCACATATTTGG
CTAACCCATAATCANNNNNNTAATCAGTTTTGGGGAAAATTTAGTCCCCT
GCTAGTGATAAACTAACATAAACTAGAAATAGGGTTGCCGGCAACCAATA
TCTGTAGGGCGGGAGGGAGGTAAAAAAATTCTGAGACTTGAACACCGCCA
CCTTAATCCTTGTTTGTGCTTTGAGAGTATAGCCAATATCGCACGGAACC
AAGTGAGAAGTAAGGCTACTCGCAGGCGGGACGCCCCGGTAGTATCGCAG
GCGGAATAAGTGATTTAGACGATTTAAAATTAAACTACGATTTAACTACT
TATTGTTAAATAAACATTTAATTTCCAAATTCGTTCATCTGTTATGAGGG
GAGTAGAATAGATTGAGACATTTTTCAATTAAGTTTGGCGTTCACATATT
TGGCTAACCCATAATCAGTTTTGGGGAAAATTTAGTCCCAACCGAAGGTA
TCCCCAAAACAAGACAATGGTTGCAGACCAGACCGCCGTCAAGGTTTCTG
AGAGAACAGAACCGCCATTCGAAATTCCCTCAAACCAAAGAAGTGACTCC
CTTTGAGTAGGACCCGACCTGAGACACTTTTAGGGTTGAAACCAGACCGC
CGTCAAGGTTTCTGAGAGAACCGAACCGCCGTTCGAAATTCCCTCAAAGG
AGTGACTCCCCTTGCGTAGGAACCGACCTGAGACACTTTTAGGGTTGAAA
CCAGACCGCCGTCAAGGTTTCTGAGAGAACCGAACCGCCGTTCGAAATTC
CCTCAAAGGAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024500XLOC_024500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040337-exon-sc0002393-1575043694:29465..30203TCONS_00040337-exon-sc0002393-1575043694:29465..30203Clytia hemisphaericaexon
TCONS_00040337-exon-sc0002393-1575043694:22691..22737TCONS_00040337-exon-sc0002393-1575043694:22691..22737Clytia hemisphaericaexon
TCONS_00040337-exon-sc0002393-1510915933:29465..30203TCONS_00040337-exon-sc0002393-1510915933:29465..30203Clytia hemisphaericaexon
TCONS_00040337-exon-sc0002393-1510915933:22691..22737TCONS_00040337-exon-sc0002393-1510915933:22691..22737Clytia hemisphaericaexon
TCONS_00040337-exon-sc0002393-1491911889:29465..30203TCONS_00040337-exon-sc0002393-1491911889:29465..30203Clytia hemisphaericaexon
TCONS_00040337-exon-sc0002393-1491911889:22691..22737TCONS_00040337-exon-sc0002393-1491911889:22691..22737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002393supercontigsc0002393:22691..30203 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top