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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040329 ID=TCONS_00040329|Name=TCONS_00040329|organism=Clytia hemisphaerica|type=transcript|length=2076bp
TAAAGAACGGAAATTGAGAGTTGTAGAACAAAAAAGCACGATGGAGGAGA
AACCAAAATTGGTGGCTACTGAAGATGAAATACGTTattacaaatgtcaa
aaattacGCGGAAAGTTTGACGAGAAACTTCAGGAGAAAGTATTTGATGA
AATGAAGACTGAAGATCCTCAGGAAATCTACAAATTCTTTGAGACCAAGA
AAAAGCAAATCCTAAAATGTAGGAAGAAAGGAGTCATCAATGTTAACCAG
TTTAACCTTCTCCTACCATCGAACGGCGAAACAAATGTTAAACTGTTCGA
TACAAGCTTGCTGATTTTTGTACTGACAGAGTTTTTCAATAGCGAGCATC
ATATTCTGCAGAAAATCCGAAACTGGTTGCAACATAAAACACCACCAGAA
CTCGATGAACAACAATTCAACGATATCTTTGATGCAGTCGAGAAACCTTT
GATGAATTTAGGAGTACCAAAGGAGGATTTGGAAAGAATCAAGAAAATGA
GAGTGATGGATGCTGAAGCGAAAAGATTGCTGAAAATCAAATCCTTCAAT
TACAACTGTCAACCTCCTATTGCCAACCATCACCATCGTGAAGCAGTTAT
TGATAACATCCATGCAGCTATGCTTCTACAACATGCAGATGACAAAAAGT
TTGGAGTTGTTGTCAGTGGATTACCAGGTTGCGGAAAATCTGAAGCAGCT
AAAGTCTACTGGAAGACCTTCCAAAAGAAGTATTATGAGGACGCAGTCTG
TTGGGTAAATTGTAATGACTATATGTCTATGCTGAAATCCTTTGGCGATA
TTGCTGACCGATGCGGAATNTCAAGGAAATGAGAGTGATGGATGCTGAAG
CGAAAAGATTGCTAAAAATCAAATCCTTCAATTACAACTGTCAACCTCCT
GTTGCCAACCATCACCATCGTGAAGCAGTTATTGATAACATCCATGCAGC
AATGATTCTACAACATGCAGATGACACAAAGTTTGGAGTCGTCGTCAGTG
GATTACCAGGTTGCGGAAAATCTGAAGCAGCTAAGGTCTACTGGAAGACC
TTCCAAAAGAATTATTACGAGGACGCAGTCTGTTGGGTGAATTGTAATGA
CTATAGGTCTATGCTGAAATCCTTTGAAAATATTGCTGACCGATGCGGAA
TCAACATAAAAAAACCAGACGGATCGTACAGAAAGTTAGAGGAGATTGCA
GACCTTGTGTACAGGTTCTTTAGTACGGAACAAGAAGAAAACATACCAAG
GAAAGTTCTATTCATCTTCGATAACGCTGATGACCAAAACAACGTTGGTA
AATTCATTCCAACGGCAAACTATGATGCAATACACATGTTGATCACATCA
CAATGCAAAGTATGGGATCCACGTTTCCGAGTTATCAAGCTAGATGTTTT
CACGGTTGAAGAATCTCAAATCTTTCTCAAACAAAATATCAAACGAGATG
AAACAGAATCCACGACCAAGCAGCTCTATGAAATGCTCGGGTGTCATCCT
TTGGGTATGCAACAAGCAGTATCCTACATTAACGAGCATGGTATTGATAT
AGAAACTTACATTATCGAGtttaaaaagagacaaaaggaGTACATGTCAA
TGGAATCGGATCAGATCGGAAGAGCGACCGTTTACACCACCTTATCGTTA
GCTTACGAGAGAATCGAGAACGAAGGTGACAGCGACATTATCCAGCTAAT
CAACACCATTGCATATCTAGATGGAAGAGATATCAAGAAAGGTCTCTTAC
TCAAATGTGTCAACGACGACGTATCAACCTTGAACAACATACTCCATCTT
TTATCAAAGAATTCAATCATTAATATCTCATTGTCGAATAGCAACACTTC
GTATGCTGAACAGCAACTAACGTGTCATTCCTTAACACAAGCATTCTTGA
AAATTCACCAAATTGATAAACGTGAAGAAATAATACAGATGCTTGGAACA
GTTTTTATTGGAGATCTTAAGAGATGTAGAAATGAAAACCTGAAGATGGA
TGGATATTTCTGGTATCAGCATTTCCATCATATTTGCAATAGTGATCAAG
ATAGTGCACTCTTAATGGAATTCAAA Run BLAST on NCBI protein sequence of TCONS_00040329-protein >TCONS_00040329-protein ID=TCONS_00040329-protein|Name=TCONS_00040329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MRNXKEMRVMDAEAKRLLKIKSFNYNCQPPVANHHHREAVIDNIHAAMIL
QHADDTKFGVVVSGLPGCGKSEAAKVYWKTFQKNYYEDAVCWVNCNDYRS
MLKSFENIADRCGINIKKPDGSYRKLEEIADLVYRFFSTEQEENIPRKVL
FIFDNADDQNNVGKFIPTANYDAIHMLITSQCKVWDPRFRVIKLDVFTVE
ESQIFLKQNIKRDETESTTKQLYEMLGCHPLGMQQAVSYINEHGIDIETY
IIEFKKRQKEYMSMESDQIGRATVYTTLSLAYERIENEGDSDIIQLINTI
AYLDGRDIKKGLLLKCVNDDVSTLNNILHLLSKNSIINISLSNSNTSYAE
QQLTCHSLTQAFLKIHQIDKREEIIQMLGTVFIGDLKRCRNENLKMDGYF
WYQHFHHICNSDQDSALLMEFK Run BLAST on NCBI transcript from alignment at sc0002392:10127..12465+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040329 ID=TCONS_00040329|Name=TCONS_00040329|organism=Clytia hemisphaerica|type=transcript|length=2339bp|location=Sequence derived from alignment at sc0002392:10127..12465+ (Clytia hemisphaerica)
TAAAGAACGGAAATTGAGAGTTGTAGAACAAAAAAGGTAAAGATGACTCA
TTCCGTTTCTTGTTAGCCTTcatgttttcactttttttctacGTCATTCT
AGTCACTTTTTTGCGAATCGAGATGAATTTATCTAAGACAGCTGATGATT
GTATTAACGGAAAACTTAGAGTACTgtaaagaaaattgtttttttttcct
gaaaattgtATTATGCTCCTTCGCCTTGTAGAGCACTCTTGAAGCATCGC
TTAACCTTTAATACATGTCAAAAACAGCATACTAATGAATTATTTTCAGC
ACGATGGAGGAGAAACCAAAATTGGTGGCTACTGAAGATGAAATACGTTa
ttacaaatgtcaaaaattacGCGGAAAGTTTGACGAGAAACTTCAGGAGA
AAGTATTTGATGAAATGAAGACTGAAGATCCTCAGGAAATCTACAAATTC
TTTGAGACCAAGAAAAAGCAAATCCTAAAATGTAGGAAGAAAGGAGTCAT
CAATGTTAACCAGTTTAACCTTCTCCTACCATCGAACGGCGAAACAAATG
TTAAACTGTTCGATACAAGCTTGCTGATTTTTGTACTGACAGAGTTTTTC
AATAGCGAGCATCATATTCTGCAGAAAATCCGAAACTGGTTGCAACATAA
AACACCACCAGAACTCGATGAACAACAATTCAACGATATCTTTGATGCAG
TCGAGAAACCTTTGATGAATTTAGGAGTACCAAAGGAGGATTTGGAAAGA
ATCAAGAAAATGAGAGTGATGGATGCTGAAGCGAAAAGATTGCTGAAAAT
CAAATCCTTCAATTACAACTGTCAACCTCCTATTGCCAACCATCACCATC
GTGAAGCAGTTATTGATAACATCCATGCAGCTATGCTTCTACAACATGCA
GATGACAAAAAGTTTGGAGTTGTTGTCAGTGGATTACCAGGTTGCGGAAA
ATCTGAAGCAGCTAAAGTCTACTGGAAGACCTTCCAAAAGAAGTATTATG
AGGACGCAGTCTGTTGGGTAAATTGTAATGACTATATGTCTATGCTGAAA
TCCTTTGGCGATATTGCTGACCGATGCGGAATNTCAAGGAAATGAGAGTG
ATGGATGCTGAAGCGAAAAGATTGCTAAAAATCAAATCCTTCAATTACAA
CTGTCAACCTCCTGTTGCCAACCATCACCATCGTGAAGCAGTTATTGATA
ACATCCATGCAGCAATGATTCTACAACATGCAGATGACACAAAGTTTGGA
GTCGTCGTCAGTGGATTACCAGGTTGCGGAAAATCTGAAGCAGCTAAGGT
CTACTGGAAGACCTTCCAAAAGAATTATTACGAGGACGCAGTCTGTTGGG
TGAATTGTAATGACTATAGGTCTATGCTGAAATCCTTTGAAAATATTGCT
GACCGATGCGGAATCAACATAAAAAAACCAGACGGATCGTACAGAAAGTT
AGAGGAGATTGCAGACCTTGTGTACAGGTTCTTTAGTACGGAACAAGAAG
AAAACATACCAAGGAAAGTTCTATTCATCTTCGATAACGCTGATGACCAA
AACAACGTTGGTAAATTCATTCCAACGGCAAACTATGATGCAATACACAT
GTTGATCACATCACAATGCAAAGTATGGGATCCACGTTTCCGAGTTATCA
AGCTAGATGTTTTCACGGTTGAAGAATCTCAAATCTTTCTCAAACAAAAT
ATCAAACGAGATGAAACAGAATCCACGACCAAGCAGCTCTATGAAATGCT
CGGGTGTCATCCTTTGGGTATGCAACAAGCAGTATCCTACATTAACGAGC
ATGGTATTGATATAGAAACTTACATTATCGAGtttaaaaagagacaaaag
gaGTACATGTCAATGGAATCGGATCAGATCGGAAGAGCGACCGTTTACAC
CACCTTATCGTTAGCTTACGAGAGAATCGAGAACGAAGGTGACAGCGACA
TTATCCAGCTAATCAACACCATTGCATATCTAGATGGAAGAGATATCAAG
AAAGGTCTCTTACTCAAATGTGTCAACGACGACGTATCAACCTTGAACAA
CATACTCCATCTTTTATCAAAGAATTCAATCATTAATATCTCATTGTCGA
ATAGCAACACTTCGTATGCTGAACAGCAACTAACGTGTCATTCCTTAACA
CAAGCATTCTTGAAAATTCACCAAATTGATAAACGTGAAGAAATAATACA
GATGCTTGGAACAGTTTTTATTGGAGATCTTAAGAGATGTAGAAATGAAA
ACCTGAAGATGGATGGATATTTCTGGTATCAGCATTTCCATCATATTTGC
AATAGTGATCAAGATAGTGCACTCTTAATGGAATTCAAA Coding sequence (CDS) from alignment at sc0002392:10127..12465+ >TCONS_00040329 ID=TCONS_00040329|Name=TCONS_00040329|organism=Clytia hemisphaerica|type=CDS|length=1266bp|location=Sequence derived from alignment at sc0002392:10127..12465+ (Clytia hemisphaerica)
ATGCGGAATNTCAAGGAAATGAGAGTGATGGATGCTGAAGCGAAAAGATT
GCTAAAAATCAAATCCTTCAATTACAACTGTCAACCTCCTGTTGCCAACC
ATCACCATCGTGAAGCAGTTATTGATAACATCCATGCAGCAATGATTCTA
CAACATGCAGATGACACAAAGTTTGGAGTCGTCGTCAGTGGATTACCAGG
TTGCGGAAAATCTGAAGCAGCTAAGGTCTACTGGAAGACCTTCCAAAAGA
ATTATTACGAGGACGCAGTCTGTTGGGTGAATTGTAATGACTATAGGTCT
ATGCTGAAATCCTTTGAAAATATTGCTGACCGATGCGGAATCAACATAAA
AAAACCAGACGGATCGTACAGAAAGTTAGAGGAGATTGCAGACCTTGTGT
ACAGGTTCTTTAGTACGGAACAAGAAGAAAACATACCAAGGAAAGTTCTA
TTCATCTTCGATAACGCTGATGACCAAAACAACGTTGGTAAATTCATTCC
AACGGCAAACTATGATGCAATACACATGTTGATCACATCACAATGCAAAG
TATGGGATCCACGTTTCCGAGTTATCAAGCTAGATGTTTTCACGGTTGAA
GAATCTCAAATCTTTCTCAAACAAAATATCAAACGAGATGAAACAGAATC
CACGACCAAGCAGCTCTATGAAATGCTCGGGTGTCATCCTTTGGGTATGC
AACAAGCAGTATCCTACATTAACGAGCATGGTATTGATATAGAAACTTAC
ATTATCGAGtttaaaaagagacaaaaggaGTACATGTCAATGGAATCGGA
TCAGATCGGAAGAGCGACCGTTTACACCACCTTATCGTTAGCTTACGAGA
GAATCGAGAACGAAGGTGACAGCGACATTATCCAGCTAATCAACACCATT
GCATATCTAGATGGAAGAGATATCAAGAAAGGTCTCTTACTCAAATGTGT
CAACGACGACGTATCAACCTTGAACAACATACTCCATCTTTTATCAAAGA
ATTCAATCATTAATATCTCATTGTCGAATAGCAACACTTCGTATGCTGAA
CAGCAACTAACGTGTCATTCCTTAACACAAGCATTCTTGAAAATTCACCA
AATTGATAAACGTGAAGAAATAATACAGATGCTTGGAACAGTTTTTATTG
GAGATCTTAAGAGATGTAGAAATGAAAACCTGAAGATGGATGGATATTTC
TGGTATCAGCATTTCCATCATATTTGCAATAGTGATCAAGATAGTGCACT
CTTAATGGAATTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040329-exon-sc0002392-1491911889:10127..10162 | TCONS_00040329-exon-sc0002392-1491911889:10127..10162 | Clytia hemisphaerica | exon |
| TCONS_00040329-exon-sc0002392-1510915933:10127..10162 | TCONS_00040329-exon-sc0002392-1510915933:10127..10162 | Clytia hemisphaerica | exon |
| TCONS_00040329-exon-sc0002392-1575043694:10127..10162 | TCONS_00040329-exon-sc0002392-1575043694:10127..10162 | Clytia hemisphaerica | exon |
| TCONS_00040329-exon-sc0002392-1491911889:10426..12465 | TCONS_00040329-exon-sc0002392-1491911889:10426..12465 | Clytia hemisphaerica | exon |
| TCONS_00040329-exon-sc0002392-1510915933:10426..12465 | TCONS_00040329-exon-sc0002392-1510915933:10426..12465 | Clytia hemisphaerica | exon |
| TCONS_00040329-exon-sc0002392-1575043694:10426..12465 | TCONS_00040329-exon-sc0002392-1575043694:10426..12465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002392 | supercontig | sc0002392:10127..12465 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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