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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040327 ID=TCONS_00040327|Name=TCONS_00040327|organism=Clytia hemisphaerica|type=transcript|length=1229bp
CTGGAATTCGGGATGATATCGCCGCAGGGCAGTTATTAGAATGTACAACT
GAACAGTTGGGAAACATATTGCTCCGTGCGGAACCTGCTTTCACTACCAA
ACCTGCAGCCGAGGCTTTACAAGTGTTGAAATCCGTTGCTGTGGTACCAG
TTGCACTTGGAGTCCTTCGCTCGGAACTAAGTGTTATGCGACAAGACCCT
GAGGAGCCATTTCGAACATTTGCGGCTAGAGTGCAAGGAAAAGCTGAAGT
GTGTGGNTGCTATAGCCTCCGACAGTGACCCAGTTGGTCAAATATCAACC
GTTCGATCGATTCCGCTTGGTCATCATATCTTCAACAAGGGAGAGTGGAG
ACGCTCCGACATCAAGGAACACCCTCGCATTCAACTTGAACTTTCATCAA
AAAACGCTTCTACATCAGTTACTGCGATGGCAGACTCTGGTGCCCAATCA
AATCTTTGGTCGCTTAGCCAATTCTTGAATGCTGGCTTTACGAGGGAGCC
TTCTTTGCAAAGTTGACAGGAAGATCTCCCAATGGGAAAAAGGTTTCGTG
TCAATCGATGATTTATGTTAGCAAGGATGTGAAGTCTTTGTACCTTTCTT
ATGACACTATGCTAGATTTGGGAATTCTCAATAGAAATTTTCCACAAATC
GGTATGTTCCAAGATAAAGAGCAAAGCTTAACCCAGAACATTGACACTTC
TGTGAGTTCTGGTATGATTTACGGCGCCACCAAAGATGACGGTGGCATTT
GTGATTGTCCTAAACGCACACCAGTTCCTGATAAGCCAGACGAGTTTCCC
TTTCTGTGCACACCTGAGAACAATAGCAAAATGAAAGCTTGGCTCTTAGA
TCGTTACAAGAGCTCAACTTTCAACAGGTGCCCGCATCAGCTTCTTCCTT
CAATGACAGGACCGCCAGTTGAGATTCATATCAAGGACGATGTCAAACCG
ATCGCATGTCACAAGGCTACTCCGATACCCCTGCACTGGCAAAAGACTGT
TGAATCTGATTTGCATCGTGACGAAGCTTTGGGCGTGATTGAACGTGTTC
CCATCGGAGAGCCTGTCGATTGGTGTCACCGAATGGTCGTTACTCGAAAA
CCGGATGGTAACCCAAGACGCACTGTCGACCTCTCGCCACTAAACAAGTT
CTGCAAACGTGAAACCCACAATTCAGAAGCCCCATTCCACGTTGCTCGAC
GGGTACCCAGAAACACTTGGAAGACCGTN Run BLAST on NCBI protein sequence of TCONS_00040327-protein >TCONS_00040327-protein ID=TCONS_00040327-protein|Name=TCONS_00040327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MIYVSKDVKSLYLSYDTMLDLGILNRNFPQIGMFQDKEQSLTQNIDTSVS
SGMIYGATKDDGGICDCPKRTPVPDKPDEFPFLCTPENNSKMKAWLLDRY
KSSTFNRCPHQLLPSMTGPPVEIHIKDDVKPIACHKATPIPLHWQKTVES
DLHRDEALGVIERVPIGEPVDWCHRMVVTRKPDGNPRRTVDLSPLNKFCK
RETHNSEAPFHVARRVPRNTWKTX Run BLAST on NCBI transcript from alignment at sc0002391:6562..7790 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040327 ID=TCONS_00040327|Name=TCONS_00040327|organism=Clytia hemisphaerica|type=transcript|length=1229bp|location=Sequence derived from alignment at sc0002391:6562..7790 (Clytia hemisphaerica)
NACGGTCTTCCAAGTGTTTCTGGGTACCCGTCGAGCAACGTGGAATGGGG
CTTCTGAATTGTGGGTTTCACGTTTGCAGAACTTGTTTAGTGGCGAGAGG
TCGACAGTGCGTCTTGGGTTACCATCCGGTTTTCGAGTAACGACCATTCG
GTGACACCAATCGACAGGCTCTCCGATGGGAACACGTTCAATCACGCCCA
AAGCTTCGTCACGATGCAAATCAGATTCAACAGTCTTTTGCCAGTGCAGG
GGTATCGGAGTAGCCTTGTGACATGCGATCGGTTTGACATCGTCCTTGAT
ATGAATCTCAACTGGCGGTCCTGTCATTGAAGGAAGAAGCTGATGCGGGC
ACCTGTTGAAAGTTGAGCTCTTGTAACGATCTAAGAGCCAAGCTTTCATT
TTGCTATTGTTCTCAGGTGTGCACAGAAAGGGAAACTCGTCTGGCTTATC
AGGAACTGGTGTGCGTTTAGGACAATCACAAATGCCACCGTCATCTTTGG
TGGCGCCGTAAATCATACCAGAACTCACAGAAGTGTCAATGTTCTGGGTT
AAGCTTTGCTCTTTATCTTGGAACATACCGATTTGTGGAAAATTTCTATT
GAGAATTCCCAAATCTAGCATAGTGTCATAAGAAAGGTACAAAGACTTCA
CATCCTTGCTAACATAAATCATCGATTGACACGAAACCTTTTTCCCATTG
GGAGATCTTCCTGTCAACTTTGCAAAGAAGGCTCCCTCGTAAAGCCAGCA
TTCAAGAATTGGCTAAGCGACCAAAGATTTGATTGGGCACCAGAGTCTGC
CATCGCAGTAACTGATGTAGAAGCGTTTTTTGATGAAAGTTCAAGTTGAA
TGCGAGGGTGTTCCTTGATGTCGGAGCGTCTCCACTCTCCCTTGTTGAAG
ATATGATGACCAAGCGGAATCGATCGAACGGTTGATATTTGACCAACTGG
GTCACTGTCGGAGGCTATAGCANCCACACACTTCAGCTTTTCCTTGCACT
CTAGCCGCAAATGTTCGAAATGGCTCCTCAGGGTCTTGTCGCATAACACT
TAGTTCCGAGCGAAGGACTCCAAGTGCAACTGGTACCACAGCAACGGATT
TCAACACTTGTAAAGCCTCGGCTGCAGGTTTGGTAGTGAAAGCAGGTTCC
GCACGGAGCAATATGTTTCCCAACTGTTCAGTTGTACATTCTAATAACTG
CCCTGCGGCGATATCATCCCGAATTCCAG Coding sequence (CDS) from alignment at sc0002391:6562..7790 >TCONS_00040327 ID=TCONS_00040327|Name=TCONS_00040327|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0002391:6562..7790 (Clytia hemisphaerica)
NACGGTCTTCCAAGTGTTTCTGGGTACCCGTCGAGCAACGTGGAATGGGG
CTTCTGAATTGTGGGTTTCACGTTTGCAGAACTTGTTTAGTGGCGAGAGG
TCGACAGTGCGTCTTGGGTTACCATCCGGTTTTCGAGTAACGACCATTCG
GTGACACCAATCGACAGGCTCTCCGATGGGAACACGTTCAATCACGCCCA
AAGCTTCGTCACGATGCAAATCAGATTCAACAGTCTTTTGCCAGTGCAGG
GGTATCGGAGTAGCCTTGTGACATGCGATCGGTTTGACATCGTCCTTGAT
ATGAATCTCAACTGGCGGTCCTGTCATTGAAGGAAGAAGCTGATGCGGGC
ACCTGTTGAAAGTTGAGCTCTTGTAACGATCTAAGAGCCAAGCTTTCATT
TTGCTATTGTTCTCAGGTGTGCACAGAAAGGGAAACTCGTCTGGCTTATC
AGGAACTGGTGTGCGTTTAGGACAATCACAAATGCCACCGTCATCTTTGG
TGGCGCCGTAAATCATACCAGAACTCACAGAAGTGTCAATGTTCTGGGTT
AAGCTTTGCTCTTTATCTTGGAACATACCGATTTGTGGAAAATTTCTATT
GAGAATTCCCAAATCTAGCATAGTGTCATAAGAAAGGTACAAAGACTTCA
CATCCTTGCTAACATAAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040327-exon-sc0002391-1491911889:6562..7790 | TCONS_00040327-exon-sc0002391-1491911889:6562..7790 | Clytia hemisphaerica | exon |
| TCONS_00040327-exon-sc0002391-1510915933:6562..7790 | TCONS_00040327-exon-sc0002391-1510915933:6562..7790 | Clytia hemisphaerica | exon |
| TCONS_00040327-exon-sc0002391-1575043694:6562..7790 | TCONS_00040327-exon-sc0002391-1575043694:6562..7790 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002391 | supercontig | sc0002391:6562..7790 . |
Blast
The following BLAST results are available for this feature:
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