TCONS_00040321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040321
Unique NameTCONS_00040321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040321 ID=TCONS_00040321|Name=TCONS_00040321|organism=Clytia hemisphaerica|type=transcript|length=637bp
CCCGAAGCACAGGCATAGGAACTGATAGAGTTTTCTCTTCCAGTGAAACC
TTACAAATTTTTGAGACTCCTTTGCCAGAGGAATTGAGTAATACGCATCC
TTCAAGTCCACCTTGACCATTAAGTCGTTTGGCTGGAGGAGATCCTTCAG
AAGGTCCAGAGATTCCATCTTGAAGTGCTGGTAGGGTATGTATTGGTTTA
GCCTTTTCAAATTGATCACATGTCAATACCCTGCATCCTTTTTCTCCACT
ACGAATATGGAACTCACAAACTGACCCCTTACTGGATGGACCTCCTGGAT
TGCCCCCTTTGAAGCATCTCCTTCACTTCTTTCTCCACTAGAATCACCTC
CCCTGGTTTCAATGGACACATAGGGGGTATTGACCTTTGAACAGGTTCCT
CCATGAAGGGATCCTGAGTCAAAACTTCCCAGTTTGGCAGAAAGTGTTGC
ACTTTCCCAACAGGACTTATGTGATGTTGTGGTGTTACTGGGAACATCCC
TTTGACCGCTGGATGACAGAACCTGAGGTTCTCTACCGgaataaaatttg
aaagagAAGTGTCTCTTACCTCCCCTATACTGTGGCTGTTGTTGATTTTG
CCAGCTTGATGACTGCCCTCGACCGCGACCTGAACTG
Run BLAST on NCBI

protein sequence of TCONS_00040321-protein

>TCONS_00040321-protein ID=TCONS_00040321-protein|Name=TCONS_00040321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
SSGRGRGQSSSWQNQQQPQYRGGKRHFSFKFYSGREPQVLSSSGQRDVPS
NTTTSHKSCWESATLSAKLGSFDSGSLHGGTCSKVNTPYVSIETRGGDSS
GERSEGDASKGAIQEVHPVRGQFVSSIFVVEKKDAGY
Run BLAST on NCBI

transcript from alignment at sc0002390:14920..15556

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040321 ID=TCONS_00040321|Name=TCONS_00040321|organism=Clytia hemisphaerica|type=transcript|length=637bp|location=Sequence derived from alignment at sc0002390:14920..15556 (Clytia hemisphaerica)
CAGTTCAGGTCGCGGTCGAGGGCAGTCATCAAGCTGGCAAAATCAACAAC
AGCCACAGTATAGGGGAGGTAAGAGACACTTctctttcaaattttattcC
GGTAGAGAACCTCAGGTTCTGTCATCCAGCGGTCAAAGGGATGTTCCCAG
TAACACCACAACATCACATAAGTCCTGTTGGGAAAGTGCAACACTTTCTG
CCAAACTGGGAAGTTTTGACTCAGGATCCCTTCATGGAGGAACCTGTTCA
AAGGTCAATACCCCCTATGTGTCCATTGAAACCAGGGGAGGTGATTCTAG
TGGAGAAAGAAGTGAAGGAGATGCTTCAAAGGGGGCAATCCAGGAGGTCC
ATCCAGTAAGGGGTCAGTTTGTGAGTTCCATATTCGTAGTGGAGAAAAAG
GATGCAGGGTATTGACATGTGATCAATTTGAAAAGGCTAAACCAATACAT
ACCCTACCAGCACTTCAAGATGGAATCTCTGGACCTTCTGAAGGATCTCC
TCCAGCCAAACGACTTAATGGTCAAGGTGGACTTGAAGGATGCGTATTAC
TCAATTCCTCTGGCAAAGGAGTCTCAAAAATTTGTAAGGTTTCACTGGAA
GAGAAAACTCTATCAGTTCCTATGCCTGTGCTTCGGG

Coding sequence (CDS) from alignment at sc0002390:14920..15556

>TCONS_00040321 ID=TCONS_00040321|Name=TCONS_00040321|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0002390:14920..15556 (Clytia hemisphaerica)
AGTTCAGGTCGCGGTCGAGGGCAGTCATCAAGCTGGCAAAATCAACAACA
GCCACAGTATAGGGGAGGTAAGAGACACTTctctttcaaattttattcCG
GTAGAGAACCTCAGGTTCTGTCATCCAGCGGTCAAAGGGATGTTCCCAGT
AACACCACAACATCACATAAGTCCTGTTGGGAAAGTGCAACACTTTCTGC
CAAACTGGGAAGTTTTGACTCAGGATCCCTTCATGGAGGAACCTGTTCAA
AGGTCAATACCCCCTATGTGTCCATTGAAACCAGGGGAGGTGATTCTAGT
GGAGAAAGAAGTGAAGGAGATGCTTCAAAGGGGGCAATCCAGGAGGTCCA
TCCAGTAAGGGGTCAGTTTGTGAGTTCCATATTCGTAGTGGAGAAAAAGG
ATGCAGGGTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024485XLOC_024485Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040321-proteinTCONS_00040321-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040321-exon-sc0002390-1491911889:14920..15556TCONS_00040321-exon-sc0002390-1491911889:14920..15556Clytia hemisphaericaexon
TCONS_00040321-exon-sc0002390-1510915933:14920..15556TCONS_00040321-exon-sc0002390-1510915933:14920..15556Clytia hemisphaericaexon
TCONS_00040321-exon-sc0002390-1575043694:14920..15556TCONS_00040321-exon-sc0002390-1575043694:14920..15556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002390supercontigsc0002390:14920..15556 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.091822	3.5771	2.12	2.98398	3.49196	1.32718	1.47088	0.335922	1.38014	0.385902	0.286259	0	0.050512	0	0	0	0	0	0	0.0950422	0	3.02591	3.17712	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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