TCONS_00040316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040316
Unique NameTCONS_00040316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040316 ID=TCONS_00040316|Name=TCONS_00040316|organism=Clytia hemisphaerica|type=transcript|length=386bp
ATCACTTGAAACTATGCTATACTACTACTTCAACTCCCCCAAAGTATTTG
CATGTGTTCCACACCCTGGCCATTAGCAGGTATACCTTGTCATGTTTTTA
GTTTTGTTAACAATAGCATTTGGCTTGAAcacaaacaaacaacaaaatcc
GGACATTTGTGAAAATTTGTGACATGGgttttttttattctctttcatgc
atttttttgGCATTAACATGAAGATTGATACATTTTCCTTTTATGTAAAA
GGACTAGACTGCGTTTGATTGACATGAAAATTGCAATAAAGTTACATGGA
AAAAAGTttaccaagtttatcaatcaaactttcaccatctCATAATCACA
ACCAAATGTATTTTTATTAAAGCATTTCAAAAGTTA
Run BLAST on NCBI

transcript from alignment at sc0002389:1253..1638

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040316 ID=TCONS_00040316|Name=TCONS_00040316|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0002389:1253..1638 (Clytia hemisphaerica)
TAACTTTTGAAATGCTTTAATAAAAATACATTTGGTTGTGATTATGagat
ggtgaaagtttgattgataaacttggtaaACTTTTTTCCATGTAACTTTA
TTGCAATTTTCATGTCAATCAAACGCAGTCTAGTCCTTTTACATAAAAGG
AAAATGTATCAATCTTCATGTTAATGCcaaaaaaatgcatgaaagagaat
aaaaaaaacCCATGTCACAAATTTTCACAAATGTCCggattttgttgttt
gtttgtgTTCAAGCCAAATGCTATTGTTAACAAAACTAAAAACATGACAA
GGTATACCTGCTAATGGCCAGGGTGTGGAACACATGCAAATACTTTGGGG
GAGTTGAAGTAGTAGTATAGCATAGTTTCAAGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024480XLOC_024480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040316-exon-sc0002389-1491911889:1253..1638TCONS_00040316-exon-sc0002389-1491911889:1253..1638Clytia hemisphaericaexon
TCONS_00040316-exon-sc0002389-1510915933:1253..1638TCONS_00040316-exon-sc0002389-1510915933:1253..1638Clytia hemisphaericaexon
TCONS_00040316-exon-sc0002389-1575043694:1253..1638TCONS_00040316-exon-sc0002389-1575043694:1253..1638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002389supercontigsc0002389:1253..1638 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.400878	0	0.453895	0.222033	0.810911	0	0.515393	0.965008	0.844531	0.45025	0.64217	0.667457	0.278497	0.830637	0.56908	0.381279	0.902814	1.13856	0	0.668891	1.55037	0.972535	0.995204	0.417879	0	0	1.09937	0.586638	1.48835	1.13332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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