TCONS_00040314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040314
Unique NameTCONS_00040314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040314 ID=TCONS_00040314|Name=TCONS_00040314|organism=Clytia hemisphaerica|type=transcript|length=295bp
NCCATACGAGCGACATGACCCAGCCAACGAAGTTGACGGCGATTCACGTA
CGAATCAACGGATTTCAGAGATAAACGATTTAACAGATCAGACGTTCTGA
TTCTCTACACACGGGTGTGGAGCCGGTTCACACGACACATTGCACGTACA
CATCTAGCATGGAATAAACGTAATTTtcggaaaagatttttggttAAACA
CCAGTGTTCAGCACCGTGTAAGAGAATAGCCAAGATAATGCATTCGTATA
CAAATTTCTTAGCTTTGTATGAAATACTGGTTGACGAAAATAAAC
Run BLAST on NCBI

transcript from alignment at sc0002386:14052..14346

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040314 ID=TCONS_00040314|Name=TCONS_00040314|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0002386:14052..14346 (Clytia hemisphaerica)
GTTTATTTTCGTCAACCAGTATTTCATACAAAGCTAAGAAATTTGTATAC
GAATGCATTATCTTGGCTATTCTCTTACACGGTGCTGAACACTGGTGTTT
aaccaaaaatcttttccgaAAATTACGTTTATTCCATGCTAGATGTGTAC
GTGCAATGTGTCGTGTGAACCGGCTCCACACCCGTGTGTAGAGAATCAGA
ACGTCTGATCTGTTAAATCGTTTATCTCTGAAATCCGTTGATTCGTACGT
GAATCGCCGTCAACTTCGTTGGCTGGGTCATGTCGCTCGTATGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024478XLOC_024478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040314-exon-sc0002386-1491911889:14052..14346TCONS_00040314-exon-sc0002386-1491911889:14052..14346Clytia hemisphaericaexon
TCONS_00040314-exon-sc0002386-1510915933:14052..14346TCONS_00040314-exon-sc0002386-1510915933:14052..14346Clytia hemisphaericaexon
TCONS_00040314-exon-sc0002386-1575043694:14052..14346TCONS_00040314-exon-sc0002386-1575043694:14052..14346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002386supercontigsc0002386:14052..14346 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43029	1.60528	0.465971	0.911759	0.554989	0	2.64552	1.48602	1.56983	0	4.47454	4.01414	2.17709	0.664091	1.13543	1.00313	0.44309	0.41563	2.93519	2.28896	2.53837	0.751972	1.4156	0.428996	1.0075	0.880553	6.24094	6.38576	0.456781	1.24245
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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