TCONS_00040313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040313
Unique NameTCONS_00040313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040313 ID=TCONS_00040313|Name=TCONS_00040313|organism=Clytia hemisphaerica|type=transcript|length=252bp
ACGTACGTTTCAGTCGATTCACGCGATGTGAATAAAACAGCTGTGTCATC
AGCATATTCCGAATCTGGTAAAGAGAATTCCTCGATATTTCTCTTTGTGT
TGTACGACCAGTTAATACATCATCGAACTTCGTATGGAAAATACAGACTG
GTCTATCATACGCATTACGCCATGATATCATTACGGCTGCAAGATAAAAT
ATGAACAACAGAGGACCCAAAATATCCCCCTGTTTGACTCCAATAATACT
TT
Run BLAST on NCBI

transcript from alignment at sc0002386:13547..13798

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040313 ID=TCONS_00040313|Name=TCONS_00040313|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0002386:13547..13798 (Clytia hemisphaerica)
AAAGTATTATTGGAGTCAAACAGGGGGATATTTTGGGTCCTCTGTTGTTC
ATATTTTATCTTGCAGCCGTAATGATATCATGGCGTAATGCGTATGATAG
ACCAGTCTGTATTTTCCATACGAAGTTCGATGATGTATTAACTGGTCGTA
CAACACAAAGAGAAATATCGAGGAATTCTCTTTACCAGATTCGGAATATG
CTGATGACACAGCTGTTTTATTCACATCGCGTGAATCGACTGAAACGTAC
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024477XLOC_024477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040313-exon-sc0002386-1491911889:13547..13798TCONS_00040313-exon-sc0002386-1491911889:13547..13798Clytia hemisphaericaexon
TCONS_00040313-exon-sc0002386-1510915933:13547..13798TCONS_00040313-exon-sc0002386-1510915933:13547..13798Clytia hemisphaericaexon
TCONS_00040313-exon-sc0002386-1575043694:13547..13798TCONS_00040313-exon-sc0002386-1575043694:13547..13798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002386supercontigsc0002386:13547..13798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.742833	1.11117	3.02612	0.0958962	1.46982	0	0.955029	3.44122	1.10127	5.2545	0	4.02278	7.92165	0.51306	0.843611	1.71512	0.557642	3.35826	11.7084	13.1318	1.87387	3.84965	0	1.91149	0	2.36917	7.70202	14.1525	0	1.68004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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