TCONS_00040310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040310
Unique NameTCONS_00040310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040310 ID=TCONS_00040310|Name=TCONS_00040310|organism=Clytia hemisphaerica|type=transcript|length=605bp
ctcccataatcaaacgttcgaatatttttttaaataattttcttaattac
tttaagTCATAAAATCtgttcatgaaattgacaatagatttattcTTTTT
TAGGAAGAATGCAGAATAGAATATGGAATACAAAATAGGAAAGGAAAACA
TTAAGTAGTAAAGTCAGTAAAGTCCGCCTAATAACACTAGACAGTGTTTT
TTTTACAATCACTTTTGTGTATTTAATAATAATGGATGAAAAGAAAAGGT
TTTCATTTCACTGTCGTTAACGATTATCCAGAAACGTCACTTTGATATTC
AAAGTCTGGTGATTTTAAGTGTAATGTCAATATGCGCTGCACCGTATCCA
TCATAACGTCGTTTGACACTTTCATCCAGTACGTCTTTCATTTGGAACAC
GTCACCGTGTGGCGATCCATTATTATCATCTCCAAAGTCATCCCACTCCC
AAACAGTGCCTAGAGCTGTTAAATTTCCTGCATGAGCAAACTCGTTGGTT
TCCTGGAAAATATGAGTATTGGTAATAGTATGCGTTGCACCATTTGGGAC
GTTCAAATAATTGGGTTTCCACAAATGCCACATCACGACGTTTTGGttca
aatcg
Run BLAST on NCBI

transcript from alignment at sc0002385:19480..20202-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040310 ID=TCONS_00040310|Name=TCONS_00040310|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at sc0002385:19480..20202- (Clytia hemisphaerica)
CTCCCATAATCAAACGTTCGAATATTTTTTTAAATAATTTTCTTAATTAC
TTTAAGTCATAAAATCTGTTCATGAAATTGACAATAGATTTATTCTTTTT
TAGGAAGAATGCAGAATAGAATATGGAATACAAAATAGGAAAGGAAAACA
TTAAGTAGTAAAGTCAGTAAAGTCCGCCTAATAACACTAGACAGTGTTTT
TTTTACAATCACTTTTGTGTATTTAATAATAATGGATGAAAAGAAAAGGT
TCTCCTTTCACTGTCGTTAACGATTATTCAGAAACGTCACTTTGATATTC
AAAGTCTGGTGATTTTAAGTGTAATGTCAATATGCGCTNTTTAATAATAA
TGGATGAAAAGAAAAGGTTTTCATTTCACTGTCGTTAACGATTATCCAGA
AACGTCACTTTGATATTCAAAGTCTGGTGATTTTAAGTGTAATGTCAATA
TGCGCTGCACCGTATCCATCATAACGTCGTTTGACACTTTCATCCAGTAC
GTCTTTCATTTGGAACACGTCACCGTGTGGCGATCCATTATTATCATCTC
CAAAGTCATCCCACTCCCAAACAGTGCCTAGAGCTGTTAAATTTCCTGCA
TGAGCAAACTCGTTGGTTTCCTGGAAAATATGAGTATTGGTAATAGTATG
CGTTGCACCATTTGGGACGTTCAAATAATTGGGTTTCCACAAATGCCACA
TCACGACGTTTTGGTTCAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024474XLOC_024474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040310-exon-sc0002385-1575043694:19955..20202TCONS_00040310-exon-sc0002385-1575043694:19955..20202Clytia hemisphaericaexon
TCONS_00040310-exon-sc0002385-1575043694:19480..19836TCONS_00040310-exon-sc0002385-1575043694:19480..19836Clytia hemisphaericaexon
TCONS_00040310-exon-sc0002385-1510915933:19955..20202TCONS_00040310-exon-sc0002385-1510915933:19955..20202Clytia hemisphaericaexon
TCONS_00040310-exon-sc0002385-1510915933:19480..19836TCONS_00040310-exon-sc0002385-1510915933:19480..19836Clytia hemisphaericaexon
TCONS_00040310-exon-sc0002385-1491911889:19955..20202TCONS_00040310-exon-sc0002385-1491911889:19955..20202Clytia hemisphaericaexon
TCONS_00040310-exon-sc0002385-1491911889:19480..19836TCONS_00040310-exon-sc0002385-1491911889:19480..19836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002385supercontigsc0002385:19480..20202 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.955042	0	0	0	0.3715	0	0	0.157283	0	0.269502	0.321065	0.243639	3.12965	2.74513	0.618631	0.528616	0	0.567249	15.6482	16.84	0.441092	0	0.498238	1.13597	0	0	0.260648	0.184206	0	0.338864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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