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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040307 ID=TCONS_00040307|Name=TCONS_00040307|organism=Clytia hemisphaerica|type=transcript|length=353bp
TAGAAAGTTCTCTTTTTCATCTGTGCAGAGCAGAGGCATTCAACATTTTG
GACTATTTGTCTGTGTTAACTTCAAGAATTGGTGGAACTTTTTTAAAAGT
TGTTTGCATACTGTGTCCATGcataaaaaattttgtttttttctctgaGA
AATGTCTTGCCACCCTTTCTTTGGTACATTTTAAAAGGATATGaagAACT
GGTGTTCATAATGAATGGTGATCAGGAGATTGAGGATTCAGGAAGAACAA
ACATTCTTAATGATTCAACTACGgCTGAAGATACTGTTACTGAAAACCAG
GAGACATCTAAGCATGGTCCCTTCAAAAGTGAAATGGACGAGTCCCTCTA
CCT Run BLAST on NCBI transcript from alignment at sc0002384:19066..23891+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040307 ID=TCONS_00040307|Name=TCONS_00040307|organism=Clytia hemisphaerica|type=transcript|length=4826bp|location=Sequence derived from alignment at sc0002384:19066..23891+ (Clytia hemisphaerica)
TAGAAAGTTCTCTTTTTCATCTGTGCAGAGCAGAGGCATTCAACATTTTG
GACTATTTGTCTGTGTTAACTTCAAGAATTGGTGGAACTTTTTTAAAAGT
TGTTTGCATACTGTGTCCATGcataaaaaattttgtttttttctctgaGA
AATGTCTTGCCACCCTTTCTTTGGTACATTTTAAAAGGATATGaaggtaa
gaaaattttttttccaaatatgaATATAATTTTCTAACAGAATAAAATCT
GAGAAAAGTTTTATTCAATTTTGTTATTGACAAGCTGTCCAAACGTCAGA
GTCTTATTAGGTTTCTTTTAAATTTCAGGGAAATGTTTCTACTTTTCTCT
CTTGTCTCTTGTGACGCATAGGATAATTAAACAAACCCCGTGAAAAATCT
CTTAGATGTACCCCAAGCAGGTAGCTCTTACTAGAAGgtgaaattttgga
caaaaaaccTAACATTTTCAAGAACCAGATCAAAATGACCCTTCATTAGA
AAGCTAATTGATGGAgagaatttaaaaataaaatgaaatcaagtttttga
aaatttggggtCTGGAAgtgaattttgattatttttatttttcataaggC
AAAATGGCCATATTCACCTTTGAATCACTAGAATCGCCCAAAACTGCCTG
TTGCCAACGTGAAACCtctgaaattaatgatgaattctaaatttttgtca
cttttagccatttttcgaccaaaaacttcaaacaaagCCTATGAAACCTG
TTTGTAACACTCTAATTTTGTACATGAAAAGAgcattaaaaattttaaaa
agtgaaattttgtggtTTCGGGATATTTTCATTTTGGGGTTTCGGGATAT
TTTCATTTTGGGTTTTTTTCTATATACCTCTGCTCTAGGCAAAAGCTAAG
CTTGAAAGCATGATTTGGTAGCAAACTccctctttttaaccaatcctTTA
AGAATCATTTTATAATAATGACTGAAATACTTAAAAACCCGATTAACTTT
TGTGAGATGAACTTTTGTTAGCTTCACAAATTTTACCCTTTCAAAATTGC
TCGTTGGCAAAAGTTTATCATGCAAAGTTTATACAAAAAATTTGCCAGTT
AAAGTAAAAAAGAACCTTTACTGTTTGCTTCTTTCTTGTTTTTAGAACTG
GTGTTCATAATGAATGGTGATCAGGAGATTGAGGATTCAGGAAGAACAAA
CATTCTTAATGATTCAACTACGGTAAGAGTAATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAGT
GAACCAGTCTGGCTGTTCATAAGTTTGCCTTTTTAACTGATTTCATATTG
ATTTGCCAGCTTAGTatctttaattttttggccGGTTAGCCCGGGgaaaa
tagccaaaatattCCGGAACGGGAccaagaatcttagtgcagaaaAAAGA
AACTTATAAGGTTTCACGGTACTCAACtgtctttgtatttttgtaggCTG
AAGATACTGTTACTGAAAACCAGGAGACATCTAAGCATGGTGAGtgtaga
aatattttttgggcCTTGGGGTAGGTATAGGACTACAGTAACCTTTGATT
AAAGTAACCTTTTTCTGTCCCTTTTTTATGGTTTGAAAGGATttttcagg
gattaaattttgcaattttatgttttcaaaatatgttgCAGAataatttc
gtgattttttgtgaatttttttacccAATTTAATACCCTTAAAATAAAGG
CTTTTcctaaaagattttttataaatttcaaagaaaatttaggTGTAACC
ACTGCTTTAACTTATTTTTGTAACCGTAAATATTTGTTCCCTCAAGAACA
TTGATTCTGTGAACATTTAAAgcaaatttttatcattttctatAGTTTTT
ATCATTATATATCCCAACATACATGTCTTCTGTGTTTCTCTTAGCCCGGC
GTGACCACCTGGGTTTGTCTTTtggatttgttttgttttgttttttgtct
gTCTCATCCGTCATTCTTGTCGCCTTTATTGCAATAGTCtccacaaaaat
tttattacataCATACTTACTTGTTATATTTATAGTCAGTTATAATGTGA
GTATATCTCTTTTGACGAAAAATAGGCAGGGCAGCGTCCGTtagtggcca
aaaagggcactttttctagtgtttttcactaaaaaggcAGTTTTTACCAA
AGTTTTAGTGATTTCAGGAGNCTTTTTCTAgtgtttttcactaaaaaggc
AGTTTTTACCAAAGTTTTAGtgatttcaggaggggcagcaTCCGATGACC
GGATGCTAAAAGCGCACAAAAAATGGTCtgcaaatcaaaattcaaaattt
taagccatttttcaatttttttcaattctcaAAATTGTGATctaaaacta
atattttttaaagtaatCAAGAACAACAAGAAATCATTCAAATCCTCACC
AAAAATTTGGAACAGGGCAGgtcgatttgaaaaattttgaatgttttttg
tcCAATACCTAGGAAATTGAAAGAAACAGGCGAATTCACAAACTTGAATC
CTTTGCATCAACATCAACAcattaacatattttttttcctcTAGATCAAC
AAATGAATTTACTATAATCGTACTGATCTTCCCTTTatgattttataaaa
atttgtgTTTAAAGTTTCTATTGATTTCATCACAGCCTTTTTatctcaaa
ataaaatagagatgtttcattcaaaaagcAGATATCAGATTAGTTTTCAT
TGATGAAAACGTAAAAGTTGGCAAAAGAAGTTTTTTGGATCgtgtttaaa
ttcaaattttgatgaaaatgcattattttgaaaacataatgtaaagtgaa
aaacttttttctggtttgatgtgaaaacaataaattttttacttttaatc
atCGTAAACACTTTTGATACCATAAAAAGCAACTTTTCTAGGAAAACGAA
ACTGTCTCAATGTTACAGGCCACTTGATTGCAATTGTTgtgttttcaaac
aaaaacaaaagaatggaTGAAAATGGAACTATTAAATGTACAGTAAACAA
GATTTAAAGCTaaacacactttttttttgttataaactcaATGCTCTCTC
TTTTCTAAATTATTTGTCAAACTTCATGGTTCAATTTAGGTCCCTTCAAA
AGTGAAATGGACGAGTCCCTCTACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040307-exon-sc0002384-1491911889:19066..19261 | TCONS_00040307-exon-sc0002384-1491911889:19066..19261 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1510915933:19066..19261 | TCONS_00040307-exon-sc0002384-1510915933:19066..19261 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1575043694:19066..19261 | TCONS_00040307-exon-sc0002384-1575043694:19066..19261 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1491911889:20211..20287 | TCONS_00040307-exon-sc0002384-1491911889:20211..20287 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1510915933:20211..20287 | TCONS_00040307-exon-sc0002384-1510915933:20211..20287 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1575043694:20211..20287 | TCONS_00040307-exon-sc0002384-1575043694:20211..20287 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1491911889:22212..22254 | TCONS_00040307-exon-sc0002384-1491911889:22212..22254 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1510915933:22212..22254 | TCONS_00040307-exon-sc0002384-1510915933:22212..22254 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1575043694:22212..22254 | TCONS_00040307-exon-sc0002384-1575043694:22212..22254 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1491911889:23855..23891 | TCONS_00040307-exon-sc0002384-1491911889:23855..23891 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1510915933:23855..23891 | TCONS_00040307-exon-sc0002384-1510915933:23855..23891 | Clytia hemisphaerica | exon |
| TCONS_00040307-exon-sc0002384-1575043694:23855..23891 | TCONS_00040307-exon-sc0002384-1575043694:23855..23891 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002384 | supercontig | sc0002384:19066..23891 + |
Blast
The following BLAST results are available for this feature:
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