TCONS_00040306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040306
Unique NameTCONS_00040306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040306 ID=TCONS_00040306|Name=TCONS_00040306|organism=Clytia hemisphaerica|type=transcript|length=1315bp
NNCTCACATGGCATAGAAAGTTCTCTTTTTCATCTGTGCAGAGCAGAGGC
ATTCAACATTTTGGACTATTTGTCTGTGTTAACTTCAAGAATTGGTGGAA
CTTTTTTAAAAGTTGTTTGCATACTGTGTCCATGcataaaaaattttgtt
tttttctctgaGAAATGTCTTGCCACCCTTTCTTTGGTACATTTTAAAAG
GATATGaaggtaagaaaattttttttccaaatatgaATATAATTTTCTAA
CAGAATAAAATCTGAGAAAAGTTTTATTCAATTTTGTTATTGACAAGCTG
TCCAAACGTCAGAGTCTTATTAGGTTTCTTTTAAATTTCAGGGAAATGTT
TCTACTTTTCTCTCTTGTCTCTTGTGACGCATAGGATAATTAAACAAACC
CCGTGAAAAATCTCTTAGATGTACCCCAAGCAGGTAGCTCTTACTAGAAG
gtgaaattttggacaaaaaaccTAACATTTTCAAGAACCAGATCAAAATG
ACCCTTCATTAGAAAGCTAATTGATGGAgagaatttaaaaataaaatgaa
atcaagtttttgaaaatttggggtCTGGAAgtgaattttgattattttta
tttttcataaggCAAAATGGCCATATTCACCTTTGAATCACTAGAATCGC
CCAAAACTGCCTGTTGCCAACGTGAAACCtctgaaattaatgatgaattc
taaatttttgtcacttttagccatttttcgaccaaaaacttcaaacaaag
CCTATGAAACCTGTTTGTAACACTCTAATTTTGTACATGAAAAGAgcatt
aaaaattttaaaaagtgaaattttgtggtTTCGGGATATTTTCATTTTGG
GGTTTCGGGATATTTTCATTTTGGGTTTTTTTCTATATACCTCTGCTCTA
GGCAAAAGCTAAGCTTGAAAGCATGATTTGGTAGCAAACTccctcttttt
aaccaatcctTTAAGAATCATTTTATAATAATGACTGAAATACTTAAAAA
CCCGATTAACTTTTGTGAGATGAACTTTTGTTAGCTTCACAAATTTTACC
CTTTCAAAATTGCTCGTTGGCAAAAGTTTATCATGCAAAGTTTATACAAA
AAATTTGCCAGTTAAAGTAAAAAAGAACCTTTACTGTTTGCTTCTTTCTT
GTTTTTAGAACTGGTGTTCATAATGAATGGTGATCAGGAGATTGAGGATT
CAGGAAGAACAAACATTCTTAATGATTCAACTACGgCTGAAGATACTGTT
ACTGAAAACCAGGAGACATCTAAGCATGGTCCCTTCAAAAGTGAAATGGA
CGAGTCCCTCTACCT
Run BLAST on NCBI

transcript from alignment at sc0002384:19053..23891+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040306 ID=TCONS_00040306|Name=TCONS_00040306|organism=Clytia hemisphaerica|type=transcript|length=4839bp|location=Sequence derived from alignment at sc0002384:19053..23891+ (Clytia hemisphaerica)
NNCTCACATGGCATAGAAAGTTCTCTTTTTCATCTGTGCAGAGCAGAGGC
ATTCAACATTTTGGACTATTTGTCTGTGTTAACTTCAAGAATTGGTGGAA
CTTTTTTAAAAGTTGTTTGCATACTGTGTCCATGcataaaaaattttgtt
tttttctctgaGAAATGTCTTGCCACCCTTTCTTTGGTACATTTTAAAAG
GATATGaaggtaagaaaattttttttccaaatatgaATATAATTTTCTAA
CAGAATAAAATCTGAGAAAAGTTTTATTCAATTTTGTTATTGACAAGCTG
TCCAAACGTCAGAGTCTTATTAGGTTTCTTTTAAATTTCAGGGAAATGTT
TCTACTTTTCTCTCTTGTCTCTTGTGACGCATAGGATAATTAAACAAACC
CCGTGAAAAATCTCTTAGATGTACCCCAAGCAGGTAGCTCTTACTAGAAG
gtgaaattttggacaaaaaaccTAACATTTTCAAGAACCAGATCAAAATG
ACCCTTCATTAGAAAGCTAATTGATGGAgagaatttaaaaataaaatgaa
atcaagtttttgaaaatttggggtCTGGAAgtgaattttgattattttta
tttttcataaggCAAAATGGCCATATTCACCTTTGAATCACTAGAATCGC
CCAAAACTGCCTGTTGCCAACGTGAAACCtctgaaattaatgatgaattc
taaatttttgtcacttttagccatttttcgaccaaaaacttcaaacaaag
CCTATGAAACCTGTTTGTAACACTCTAATTTTGTACATGAAAAGAgcatt
aaaaattttaaaaagtgaaattttgtggtTTCGGGATATTTTCATTTTGG
GGTTTCGGGATATTTTCATTTTGGGTTTTTTTCTATATACCTCTGCTCTA
GGCAAAAGCTAAGCTTGAAAGCATGATTTGGTAGCAAACTccctcttttt
aaccaatcctTTAAGAATCATTTTATAATAATGACTGAAATACTTAAAAA
CCCGATTAACTTTTGTGAGATGAACTTTTGTTAGCTTCACAAATTTTACC
CTTTCAAAATTGCTCGTTGGCAAAAGTTTATCATGCAAAGTTTATACAAA
AAATTTGCCAGTTAAAGTAAAAAAGAACCTTTACTGTTTGCTTCTTTCTT
GTTTTTAGAACTGGTGTTCATAATGAATGGTGATCAGGAGATTGAGGATT
CAGGAAGAACAAACATTCTTAATGATTCAACTACGGTAAGAGTAATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAAAAAAAGTGAACCAGTCTGGCTGTTCATAAGTTTGCCTTTTTAAC
TGATTTCATATTGATTTGCCAGCTTAGTatctttaattttttggccGGTT
AGCCCGGGgaaaatagccaaaatattCCGGAACGGGAccaagaatcttag
tgcagaaaAAAGAAACTTATAAGGTTTCACGGTACTCAACtgtctttgta
tttttgtaggCTGAAGATACTGTTACTGAAAACCAGGAGACATCTAAGCA
TGGTGAGtgtagaaatattttttgggcCTTGGGGTAGGTATAGGACTACA
GTAACCTTTGATTAAAGTAACCTTTTTCTGTCCCTTTTTTATGGTTTGAA
AGGATttttcagggattaaattttgcaattttatgttttcaaaatatgtt
gCAGAataatttcgtgattttttgtgaatttttttacccAATTTAATACC
CTTAAAATAAAGGCTTTTcctaaaagattttttataaatttcaaagaaaa
tttaggTGTAACCACTGCTTTAACTTATTTTTGTAACCGTAAATATTTGT
TCCCTCAAGAACATTGATTCTGTGAACATTTAAAgcaaatttttatcatt
ttctatAGTTTTTATCATTATATATCCCAACATACATGTCTTCTGTGTTT
CTCTTAGCCCGGCGTGACCACCTGGGTTTGTCTTTtggatttgttttgtt
ttgttttttgtctgTCTCATCCGTCATTCTTGTCGCCTTTATTGCAATAG
TCtccacaaaaattttattacataCATACTTACTTGTTATATTTATAGTC
AGTTATAATGTGAGTATATCTCTTTTGACGAAAAATAGGCAGGGCAGCGT
CCGTtagtggccaaaaagggcactttttctagtgtttttcactaaaaagg
cAGTTTTTACCAAAGTTTTAGTGATTTCAGGAGNCTTTTTCTAgtgtttt
tcactaaaaaggcAGTTTTTACCAAAGTTTTAGtgatttcaggaggggca
gcaTCCGATGACCGGATGCTAAAAGCGCACAAAAAATGGTCtgcaaatca
aaattcaaaattttaagccatttttcaatttttttcaattctcaAAATTG
TGATctaaaactaatattttttaaagtaatCAAGAACAACAAGAAATCAT
TCAAATCCTCACCAAAAATTTGGAACAGGGCAGgtcgatttgaaaaattt
tgaatgttttttgtcCAATACCTAGGAAATTGAAAGAAACAGGCGAATTC
ACAAACTTGAATCCTTTGCATCAACATCAACAcattaacatatttttttt
cctcTAGATCAACAAATGAATTTACTATAATCGTACTGATCTTCCCTTTa
tgattttataaaaatttgtgTTTAAAGTTTCTATTGATTTCATCACAGCC
TTTTTatctcaaaataaaatagagatgtttcattcaaaaagcAGATATCA
GATTAGTTTTCATTGATGAAAACGTAAAAGTTGGCAAAAGAAGTTTTTTG
GATCgtgtttaaattcaaattttgatgaaaatgcattattttgaaaacat
aatgtaaagtgaaaaacttttttctggtttgatgtgaaaacaataaattt
tttacttttaatcatCGTAAACACTTTTGATACCATAAAAAGCAACTTTT
CTAGGAAAACGAAACTGTCTCAATGTTACAGGCCACTTGATTGCAATTGT
TgtgttttcaaacaaaaacaaaagaatggaTGAAAATGGAACTATTAAAT
GTACAGTAAACAAGATTTAAAGCTaaacacactttttttttgttataaac
tcaATGCTCTCTCTTTTCTAAATTATTTGTCAAACTTCATGGTTCAATTT
AGGTCCCTTCAAAAGTGAAATGGACGAGTCCCTCTACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024471XLOC_024471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040306-exon-sc0002384-1491911889:19053..20287TCONS_00040306-exon-sc0002384-1491911889:19053..20287Clytia hemisphaericaexon
TCONS_00040306-exon-sc0002384-1510915933:19053..20287TCONS_00040306-exon-sc0002384-1510915933:19053..20287Clytia hemisphaericaexon
TCONS_00040306-exon-sc0002384-1575043694:19053..20287TCONS_00040306-exon-sc0002384-1575043694:19053..20287Clytia hemisphaericaexon
TCONS_00040306-exon-sc0002384-1491911889:22212..22254TCONS_00040306-exon-sc0002384-1491911889:22212..22254Clytia hemisphaericaexon
TCONS_00040306-exon-sc0002384-1510915933:22212..22254TCONS_00040306-exon-sc0002384-1510915933:22212..22254Clytia hemisphaericaexon
TCONS_00040306-exon-sc0002384-1575043694:22212..22254TCONS_00040306-exon-sc0002384-1575043694:22212..22254Clytia hemisphaericaexon
TCONS_00040306-exon-sc0002384-1491911889:23855..23891TCONS_00040306-exon-sc0002384-1491911889:23855..23891Clytia hemisphaericaexon
TCONS_00040306-exon-sc0002384-1510915933:23855..23891TCONS_00040306-exon-sc0002384-1510915933:23855..23891Clytia hemisphaericaexon
TCONS_00040306-exon-sc0002384-1575043694:23855..23891TCONS_00040306-exon-sc0002384-1575043694:23855..23891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002384supercontigsc0002384:19053..23891 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0320775	0	0	0	10.2451	7.41046	10.2666	11.8961	15.5988	11.9742	22.1642	18.6175	10.4729	11.7679	0.0182147	0.0195471	0	0	0.0681982	0.0356823	0	0	0	0	7.28557	12.5474	0	0.0469416	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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