TCONS_00040305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040305
Unique NameTCONS_00040305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040305 ID=TCONS_00040305|Name=TCONS_00040305|organism=Clytia hemisphaerica|type=transcript|length=436bp
Ntactctgttctcacacttatgtctttttttttcgcgtcctttttcgtga
ttacttttatttatatttttaaagacaggtaagaaggcatattgatgtaa
ctgtccagcctttttataatgagcgagacatacgttctctgattacgcaa
ttttcatattgacattttcaaggcattttgatgtaactgtccaGTACTAC
TACTATCACTAGCAGTAGTAGCACTAGCCTCTGCTGCTGCTGATCCTGCT
CCTCTTGTGGGATTATATGCATGGTAGAGTCCAGGCGATTGGTGTGCTGG
TACTGGTGTCTGATTACTAACAGCCCTTCGGAGGGCTTCATTGAATTCTG
GGCTCCTTAGAAGCCTGTTAGTGATACTGGAAATATCATTGACATTATTA
CCACTCGCCatcttgattttctgatttGTCTCAAAC
Run BLAST on NCBI

transcript from alignment at sc0002383:1469..1904

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040305 ID=TCONS_00040305|Name=TCONS_00040305|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at sc0002383:1469..1904 (Clytia hemisphaerica)
GTTTGAGACaaatcagaaaatcaagatGGCGAGTGGTAATAATGTCAATG
ATATTTCCAGTATCACTAACAGGCTTCTAAGGAGCCCAGAATTCAATGAA
GCCCTCCGAAGGGCTGTTAGTAATCAGACACCAGTACCAGCACACCAATC
GCCTGGACTCTACCATGCATATAATCCCACAAGAGGAGCAGGATCAGCAG
CAGCAGAGGCTAGTGCTACTACTGCTAGTGATAGTAGTAGTACtggacag
ttacatcaaaatgccttgaaaatgtcaatatgaaaattgcgtaatcagag
aacgtatgtctcgctcattataaaaaggctggacagttacatcaatatgc
cttcttacctgtctttaaaaatataaataaaagtaatcacgaaaaaggac
gcgaaaaaaaaagacataagtgtgagaacagagtaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024470XLOC_024470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040305-exon-sc0002383-1491911889:1469..1904TCONS_00040305-exon-sc0002383-1491911889:1469..1904Clytia hemisphaericaexon
TCONS_00040305-exon-sc0002383-1510915933:1469..1904TCONS_00040305-exon-sc0002383-1510915933:1469..1904Clytia hemisphaericaexon
TCONS_00040305-exon-sc0002383-1575043694:1469..1904TCONS_00040305-exon-sc0002383-1575043694:1469..1904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002383supercontigsc0002383:1469..1904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.16199	2.20553	8.23766	9.76168	6.90752	4.77304	5.23927	5.79099	5.41324	5.69313	6.78878	11.0595	2.52533	2.74728	1.35034	0.725386	0.624859	0.959239	0.658413	1.35174	3.2672	2.49193	1.53841	1.67307	4.702	8.31534	2.3411	0	1.84278	2.51991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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