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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040294 ID=TCONS_00040294|Name=TCONS_00040294|organism=Clytia hemisphaerica|type=transcript|length=2007bp
ATCACATGAACAAGACTTGACTATCAACCGAATGAAGATTGAACTCGAAC
AGCAATTGGATAAAGATAAACAAGATGGCGGATACGGGACCAATCGGATT
GAAGCATTACATCATGAGGTGGCGTCAAAGGCTTTAAAGATTCAAGAACT
CGAACATCGATTGGTTCAAGCAGAACAAGATGGTGGATACGGGACCAATC
AGATTGAAGCATTACGTCATGAAATAGGTTCAAAGAATTCGAAAATACAG
ACCTTGCAACAAGAAATACAAATGCAAGAAGACCAGTCGCAAATTTTATT
GTCTTCCTTGAATAAGAGGCGTGAAGAATCGAAACAATTTCTAACAatgc
agcaaaaatttcgtGACGAAATCGATAGTAAAGAAGACCTAATCCgaaaa
ctcaatttcaaattgaaatcaAACGATCTTGACGTCACAGCGTCATCCTT
GAATGTGTCACGTGATGATGATTTAAGCCAATCAGAAGACGAGTTAGACA
ATAGGGATGTTTTATCGACCAATCAGGATGAAGATGTTTCAGATTCTATT
GTTGAGCTTTCAAAACAATTGAATAATGTTCGAACGCGCAATAAGAATTT
GTCACGTGATCTTGAAAAATGTCGCGGTGATTATATTCGCTTGAAGGAAG
AAAAAGATCGTTTGGATCTGACCAGCCAGAATTTAAAAGAGGATATAGAA
GTCTACAAGGATCGGATTACAGAGCTCCGTTCAATGTTACAAGCCTCACC
TGATATGCCAAGTGATGAAGATGGTTCGAATGCAGTTGGAGTTCGCACGA
AGTTGTACGCAAGTTATAAAGAGTTACGCGAAAAATCAATCGAGATTGCT
TCTTTACGAATGTGTATTGATATAAAAGATGACGAAATTAGAAGTTTACG
AGAAGAGATTGAGCAGTTACGAGGGATAAATGTTGAATTACGTGGTCAAA
ATGAGACAATATccgaaatcgatgaaaaactcGATTATTCAAAAACGAAT
AATGTTAAAGTTTTGGTAGAGGAGCTGAATAATCGAGAACGAACCGAACA
AGACTTACATAACCAGATTGCTGAGCTTCGACAACGTTTAATGcagaaat
gtaaacaaagcgATAAATTACAATTAGAATTGAATAAGGTTACAAATCGA
TTTCGGGACATCGAGCAAAAGTTATGTCAAAATGATCGAGACACGCGGGA
ACGATTTTTGCACGTGTTTGAGAACGACAATTCGGAAATCTCAGAAGTTA
CACCTCTGAATTCAATCAAACTTTTCTCGGCACTTGATACACAAGACGCG
TCAAATTTAACGGGAGACGAAAGCGATACCGAAGATTTGTCGTTAAACGA
GAATTTTACGAGGGACGACGATTGCGAGATCAGTCGGTTACGAGAATTAC
AATTGAAAACACAAGAACAAAACTTATTTTATCAAGAGCAAGTGAAATCA
TTACAAAACGAAATCCAGCGAATTAAACATTCCAATAAAACGACAAATAA
CGAAAACGAGAATTTACAACGACTATTAACGGAACTACAAATTCGTTTAC
AACAACTTGAGACGACAAAGACAGACGGTGAGTGACTACCGACTATTCAC
TCGTTCGTTGTCTTGACTACAAATGACGCACGCACAAACTTCACTTGAAC
CTACTTCTTTATTTAAAAGTCTTGAACGAACTTCAAAAAGGACGCGACGA
AAACCTGATTTTGGAAATTCAAATCAATCAGAGAGAAGAAAGACACAAAG
TGGAACTCGAGAATTTGAAAACgtgtttcaaaaatgttgaaacgGAACAC
ATGGCGTCCATTAAAAAGAGAATGGAAACTAGTTTCcaggaaaaaattgt
tttccaaGTTAAAGCTAAACAACTGGCTAATGAAGTGAAACGCAAGGACT
TGGAAATTGAAACTCTTAAGAAACGCGTACGACAATAATTGACCGCCCGC
GCGTACAGTGATGGTTTACAAATATAGGATTTTGAAACCTGGACTTCATT
TCATTNN Run BLAST on NCBI transcript from alignment at sc0002381:10529..13584+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040294 ID=TCONS_00040294|Name=TCONS_00040294|organism=Clytia hemisphaerica|type=transcript|length=3056bp|location=Sequence derived from alignment at sc0002381:10529..13584+ (Clytia hemisphaerica)
ATCACATGAACAAGACTTGACTATCAACCGAATGAAGATTGAACTCGAAC
AGCAATTGGATAAAGATAAACAAGATGGCGGATACGGGACCAATCGGATT
GAAGCATTACATCATGAGGTGGCGTCAAAGGCTTTAAAGATTCAAGAACT
CGAACATCGATTGGTTCAAGCAGAACAAGATGGTGGATACGGGACCAATC
AGATTGAAGCATTACGTCATGAAATAGGTTCAAAGAATTCGAAAATACAG
ACCTTGCAACAAGAAATACAAATGCAAGAAGACCAGTCGCAAATTTTATT
GTCTTCCTTGAATAAGAGGCGTGAAGAATCGAAACAATTTCTAACAatgc
agcaaaaatttcgtGACGAAATCGATAGTAAAGAAGACCTAATCCgaaaa
ctcaatttcaaattgaaatcaAACGATCTTGACGTCACAGCGTCATCCTT
GAATGTGTCACGTGATGATGATTTAAGCCAATCAGAAGACGAGTTAGACA
ATAGGGATGTTTTATCGACCAATCAGGATGAAGATGTTTCAGATTCTATT
GTTGAGCTTTCAAAACAATTGAATAATGTTCGAACGCGCAATAAGAATTT
GTCACGTGATCTTGAAAAATGTCGCGGTGATTATATTCGCTTGAAGGAAG
AAAAAGATCGTTTGGATCTGACCAGCCAGAATTTAAAAGAGGATATAGAA
GTCTACAAGGATCGGATTACAGAGCTCCGTTCAATGTTACAAGCCTCACC
TGATATGCCAAGTGATGAAGATGGTTCGAATGCAGTTGGAGTTCGCACGA
AGTTGTACGCAAGTTATAAAGAGTTACGCGAAAAATCAATCGAGATTGCT
TCTTTACGAATGTGTATTGATATAAAAGATGACGAAATTAGAAGTTTACG
AGAAGAGATTGAGCAGTTACGAGGGATAAATGTTGAATTACGTGGTCAAA
ATGAGACAATATccgaaatcgatgaaaaactcGATTATTCAAAAACGAAT
AATGTTAAAGTTTTGGTAGAGGAGCTGAATAATCGAGAACGAACCGAACA
AGACTTACATAACCAGATTGCTGAGCTTCGACAACGTTTAATGcagaaat
gtaaacaaagcgATAAATTACAATTAGAATTGAATAAGGTTACAAATCGA
TTTCGGGACATCGAGCAAAAGTTATGTCAAAATGATCGAGACACGCGGGA
ACGATTTTTGCACGTGTTTGAGAACGACAATTCGGAAATCTCAGAAGTTA
CACCTCTGAATTCAATCAAACTTTTCTCGGCACTTGATACACAAGACGCG
TCAAATTTAACGGGAGACGAAAGCGATACCGAAGATTTGTCGTTAAACGA
GAATTTTACGAGGGACGACGATTGCGAGATCAGTCGGTTACGAGAATTAC
AATTGAAAACACAAGAACAAAACTTATTTTATCAAGAGCAAGTGAAATCA
TTACAAAACGAAATCCAGCGAATTAAACATTCCAATAAAACGACAAATAA
CGAAAACGAGAATTTACAACGACTATTAACGGAACTACAAATTCGTTTAC
AACAACTTGAGACGACAAAGACAGACGGTGAGTGACTACCGACTATTCAC
TCGTTCGTTGTCTTGACTACAAATGACGCACGCACAAACTTCACTTGAAC
CTACTTCTTTATTTAAAAGGCATGTTCTTAATCTGTTCTTAATACATCTT
TTACATCTTATAAAGCTGTCCCATTTTATAGACCGATtccgtgtgacgtc
attttcacccacgatCAGCCATTTTGGTAGAACGAATATGTACAGGATGA
TTTAGTAACACCTTAATAGCTCAAAGTcttcaaatatttccctttGGACC
TGCGcatagttttttgtttgttttggctTCGTGGGTGAAATttatgtcag
ttaggaacaggcaGTTTGCTTGAGGTTTGCTTGAGGATAGTCCTTAACTG
GATTTTGGCGAATCGGtctatatccatacagggggtggacaacccttttc
aaacaataaaataacTTTCGCgtggacgaaaaatcgcgaaattcacgaca
tttactttcgcgaatcaagacgtaaaattgagaattttcacatgaaaaaa
tggcttagagggacaaatacttcttggattggcttgaaacatttNaattg
agaattttcacatgaaaaaatggcttagagggacaaatacttcttgggtt
ggcttgaaacatttgtctttTGACTTATTACTCTTTTAGCTGGctaaaaa
gttacattttatttaaagtttgaagttttgcagattttctattttgtcaa
gaatttttcgcgagcataaactttcgcgaatggcccttcctagaattttt
aaagacatttactttcgcgaaaagggccaaaattcgcgaaaatcgcgaaa
gtttctgctcgcgaaagtttgtacgcctaaagtacttgaaaatgtgtgga
tacccccagaaaatgacagaatttgtaAAGACCTTGGTAAATTTGCTCTT
TAAATTTGCTCGTGTTGAAAATAACAACACCCGAAAAAAGCCGGGTTTTG
ACGGCTTTCTTTGGGTGCGTTCGTTAGAAAacatgacgtcatcttgactt
acacTTATCAAGAATTGatcttttttttgagaattttaaatcttttaatC
GATCTTTATCTTACAGTCTTGNttttttttgagaattttaaatcttttaa
tCGATCTTTATCTTACAGTCTTGAACGAACTTCAAAAAGGACGCGACGAA
AACCTGATTTTGGAAATTCAAATCAATCAGAGAGAAGAAAGACACAAAGT
GGAACTCGAGAATTTGAAAACgtgtttcaaaaatgttgaaacgGAACACA
TGGCGTCCATTAAAAAGAGAATGGAAACTAGTTTCcaggaaaaaattgtt
ttccaaGTTAAAGCTAAACAACTGGCTAATGAAGTGAAACGCAAGGACTT
GGAAATTGAAACTCTTAAGAAACGCGTACGACAATAATTGACCGCCCGCG
CGTACAGTGATGGTTTACAAATATAGGATTTTGAAACCTGGACTTCATTT
CATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040294-exon-sc0002381-1491911889:10529..12197 | TCONS_00040294-exon-sc0002381-1491911889:10529..12197 | Clytia hemisphaerica | exon |
| TCONS_00040294-exon-sc0002381-1510915933:10529..12197 | TCONS_00040294-exon-sc0002381-1510915933:10529..12197 | Clytia hemisphaerica | exon |
| TCONS_00040294-exon-sc0002381-1575043694:10529..12197 | TCONS_00040294-exon-sc0002381-1575043694:10529..12197 | Clytia hemisphaerica | exon |
| TCONS_00040294-exon-sc0002381-1491911889:13247..13584 | TCONS_00040294-exon-sc0002381-1491911889:13247..13584 | Clytia hemisphaerica | exon |
| TCONS_00040294-exon-sc0002381-1510915933:13247..13584 | TCONS_00040294-exon-sc0002381-1510915933:13247..13584 | Clytia hemisphaerica | exon |
| TCONS_00040294-exon-sc0002381-1575043694:13247..13584 | TCONS_00040294-exon-sc0002381-1575043694:13247..13584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002381 | supercontig | sc0002381:10529..13584 + |
Blast
The following BLAST results are available for this feature:
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