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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040291 ID=TCONS_00040291|Name=TCONS_00040291|organism=Clytia hemisphaerica|type=transcript|length=507bp
TGCTTATTAACCATACAGGAGATGCACCTCTAGCACTTAGCTTTAGCTCA
TTGGTACCAGTACTCATTTCTGTCAGATCGCATTGTTTTTGGTTCAATTA
CAACCTGTGAAAACAAGGTAAGATAAGCAGAAAATGTGCTGCATCTAATT
AGTTCATGCAAACCACAGTGATTGATATGGTTCTCACAAACAAATATATC
GTGATGAGTTATCATTGGTTTGTGGACAAGAAAGCTGTCAGATGTCAGGA
CTTAACTAAACTTGTTATTGATATGATGGTGAAGAATACACAAAACAACT
CCGTAAAGAAACTGGAATACCCATTTGCGCCCATTTCGGCTTGACGTTAC
GGCGCCGAAAAGAATAACAGCAAAATTGAAACGCAGTTTTCCTATCGTCA
CACGCTTGCACGCTTCAGACGCCTCATCCTTTAAAATCGTCATATTACAC
AAACTCGAGCGTGTCATACACGGTGTTAAATCCAACCAAATGAAGTCAAC
ACTATTC Run BLAST on NCBI transcript from alignment at sc0002380:15756..17644+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040291 ID=TCONS_00040291|Name=TCONS_00040291|organism=Clytia hemisphaerica|type=transcript|length=1889bp|location=Sequence derived from alignment at sc0002380:15756..17644+ (Clytia hemisphaerica)
TGCTTATTAACCATACAGGAGATGCACCTCTAGCACTTAGCTTTAGCTCA
TTGGTACCAGTACTCATTTCTGTCAGATCGCATTGTTTTTGGTTCAATTA
CAACCTGTGAAAACAAGGTAAGATAAGCAGAAAATGTGCTGCATCTAATT
AGTTCATGCAAACCACAGTGATTGATATGGTTCTCACAAACAAATATATC
GTGATGAGTTATCATTGGTTTGTGGACAAGAAAGCTGTCAGATGTCAGGA
CTTAACTAAACTTGTTATTGATATGATGGTGAAGAATACACAAAACAACT
CCGTAAAGGTAGGCTACTTCTTTGTTTCGGAATCAGTGTCAATGTTGGTC
TAGGTATCGAATACCAGTCAGTAATTATGAATGTGATATACATGTTACAT
ATATAGATTGTAATATACATAAGAGCTAAGATTTTTAAACATCGTCAATC
AGTATATTGATGTAAGGGCTCGATATTTCTTAAACTTTTTCAAGTGTCAC
CCTTTGAACCAAGTTTTATGAAATTTTCCATACCTCTAATATCTTATTGA
ATGTTATGGGCCCATCCAGAAAAACAAATAGTCAATTTTAGAAACTTTGT
AAGAGTATTGTTTTAAATAAATTCAACTTTATTTTCATTGATAGAAGAGA
GTGGTCTCTCTTATACTGCAGAGCGTCCGGGATACTATGAATAATACGCT
GAAAAACCAAAAGGTTTGCATTTCTACGAATGGCAATGATAATTTTTTGT
ACCACTGGGAAAGATAGATAGATTCGATTCATTACGTGAATAACTTGTCT
ATTCGTCGTAATTTTCATTTCAAAAATTTGTCTCGTAGAAACTGGAATAC
CCATTTGCGCCCATTTCGGCTTGACGCTACGGCGCCGAAAAGAATAACAG
CAAAATTGAAACGCAGTTTTCATATCGTCACACGCTTGCACGCTTCAGAC
GCCTCATCCTTTAAAATCGTCATATTACACAAACTCGAGCGTGTCATACA
CGGTGTTAAATCCAACCAAATGAAGTCAACACTATTCGCCATTCCATATA
CAACAATTCACAACAAAGTTAAAGGTAATAaacaaaatatattaaaaaca
aTTACAGCTTTTGTAGGTCAAGTTATATAAAACCCCATCCGAAAAACCCC
TGTTTATTCCAGGGTGACCGCTTTTTGTCCAAGGGAATTTNCAATGTTGG
TCTAGCTTTCGAATACCAGTCAGTAATTATGAATGTGATATACATGTTAC
ATATATAGATTGTAATATACATAAGAGCTAAGATTTTTAAACATCGTCAA
TCAATATATTGATGTAAGGGCTCGATATTTCTTAAACTTTTTCAAGTGTC
ACCCTTTGAACCaagttttatgaaattttccataCCTCTAATATCTTATT
GAATGTTATGGGCCCATCCAGAAAAACAAATAgtcaattttagaaacttt
gtaagagtattgttttaaataaattcaactTTATTTTCATTGATAGAAGA
GAGTGGTCTCTCTTATACTGCAGAGCGTCCGGGATACTATGAATAATACG
CTGAAAAACCAAAAGGTTTGCATTTCTACGAATGgcaatgataatttttt
gtaCCACTGGGAAAGATAGATAGATTCGATTCATTACGTGAATAACTTGT
CTATTCGTcgtaattttcatttcaaaaatttgtctcGTAGAAACTGGAAT
ACCCATTTGCGCCCATTTCGGCTTGACGTTACGGCGCCGAAAAGAATAAC
AGCAAAATTGAAACGCAGTTTTCCTATCGTCACACGCTTGCACGCTTCAG
ACGCCTCATCCTTTAAAATCGTCATATTACACAAACTCGAGCGTGTCATA
CACGGTGTTAAATCCAACCAAATGAAGTCAACACTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040291-exon-sc0002380-1491911889:15756..16063 | TCONS_00040291-exon-sc0002380-1491911889:15756..16063 | Clytia hemisphaerica | exon |
| TCONS_00040291-exon-sc0002380-1510915933:15756..16063 | TCONS_00040291-exon-sc0002380-1510915933:15756..16063 | Clytia hemisphaerica | exon |
| TCONS_00040291-exon-sc0002380-1575043694:15756..16063 | TCONS_00040291-exon-sc0002380-1575043694:15756..16063 | Clytia hemisphaerica | exon |
| TCONS_00040291-exon-sc0002380-1491911889:17446..17644 | TCONS_00040291-exon-sc0002380-1491911889:17446..17644 | Clytia hemisphaerica | exon |
| TCONS_00040291-exon-sc0002380-1510915933:17446..17644 | TCONS_00040291-exon-sc0002380-1510915933:17446..17644 | Clytia hemisphaerica | exon |
| TCONS_00040291-exon-sc0002380-1575043694:17446..17644 | TCONS_00040291-exon-sc0002380-1575043694:17446..17644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002380 | supercontig | sc0002380:15756..17644 + |
Blast
The following BLAST results are available for this feature:
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