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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040290 ID=TCONS_00040290|Name=TCONS_00040290|organism=Clytia hemisphaerica|type=transcript|length=2056bp
cgctaaattgaaagaaaaagcaaaaacattGTCAGGGCTGTAATTTTCTC
AAGTAGTGCTCtatattatcttttcaacggtatgtGATTTGTTAGAATTG
AGAAACTCTTTAGAATGACAGTCCAAAGAACTAGTGCACACTTGGCACTT
GAGCCAATGACTTTGGATGTCTCATTGAAAtaacaatttttcgaaatacA
CAACTTCATCATTTTTCACAAATTGACTCTCAGCGAGAATTTATATCGAG
ACATTACTATTACAGAGGAAATACACCTCGTATTACAGTGGCAATCTACG
ATCCTCCTATTTGTAACAAGATGAACAACGAAAGCTAATCAAAACAATCG
ATACTTATTCGCCAATTAATACAAAgCTTACAAATGATAGACCAAGCACA
GTTTTTCACCATTGGATCACTTTAAAATTTGACGTAAGATATCCATGCAA
CGCTCTTCCTGTCTCTGTCTCTNACTCCAATATATCAATCGACATCGAAA
GAAATGGACAGATGTATAACCTCGTGAAAGAGCAAACAATGGCTGGTACT
GCGTTGAATGGCTTGGAAATCACTGGAATTCATGGCGATATAAGTTTGTA
GTTTTACAGATAACATACTTTTTACTTATTAAGTCACTAGAATGGAACAA
CCTAGATCGATAGTGATTGTTTTGTTTGTCTATCACGTTTGAAAATGATA
AACTCCAACgaccaaaatttttattaaaagaacaATTCTTGGAAAAGGTG
TTATTTGTCTAAGAGACTTGTTACAAAGATTTGATTATGTAAGCCCAATT
TCAACTTGAtgctttttgttttggtttcttgCAGAAGCTTTACGCCAAGT
TAAAACACGTCACCGAGCTCACAGTTTTTAACACCCACCCTGGGATTTCG
CAAATATTACAATGCAACTGCAAGCATGAGCGGGCAACGCGATAATCTAC
TAacggtgaaaattgctcaatcTCAACTCCCCCCAAATTTCACTGTCATC
ATCGAGCCACTCAAAAGAGTCGGCAGAACAAGGGCATTGCGTTGGAATTG
ACATCTGTTCATCAAGTTTGAATTGACTCTTACCGGACAGTGAGATATTC
ATGCGCACCTTGGCGTAGAATAAAACATCTTGTGTCAACATTGGTGAAGA
GTTCATACAGAAATGGAAATGCTAATCGACGGATGAAAACAATAGGCTCA
GCAACTAGAGAAGAGAAAATAGCCACTTGATCGTGAGTATATTGTAGTTT
GTTATACGCCTCGAATAATGGTTATATGTtgatgaattttattttctttc
caacgCCTCGATTGACCAATAAAACTCTTCGACGTGGTCATTTTTCAGGA
CtactggtaatgaatttacaacaaCGGGAATATAGATCTtctgaaaaatt
gtgaaaaagatcttgattgaaatcaaatttgaaaatagaaaatactTACA
GCCTCTAAATGAGGATATATATCTCATGCTGCCTTATATAAACAAAAGCT
CATTTTGTCACGGTCGATACTTCAGCTATTATTATACCCTCTCAGCTAAT
ACTACCAGCGCAATCGATTGAAAATGCTTTGGGTCCTTTTTAAACTAATT
ATTTTTGATGTCAATATTCAGAACTAACACCTGGAATGAGGTTTTCcaaa
aagtcttcaaaaataATTATGAACTGTTTAATCTAGCATGCCATGAATAG
TAGATAATTGTGTGATTTCGTGGTATCAAATCTGAAGAATGATTTTAACC
ATACACTTAAGGCTataaaaaacaatcatttttaTCGGATTAAAGGAGCA
TATGTCATTTCTAAGCAAATTTccgtttgaaaattttttcccatCAAACG
ATCCGCATAGTTAAACTTCTTGTTTGACCAAATATTACATATTACGCATT
GTTCATTCTAGATTCACTTACTTgatcaaaaattgtcaaaaaatgtcAGT
GTCTCCCAGCTTGACAGGAATCATAAACCATAAACCATTGCATTATTGTC
CCATAGTAGTGGATCTACGTTTAACCATAATTTTTATAACTATTCATGCA
TATGcc Run BLAST on NCBI transcript from alignment at sc0002380:10273..12494+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040290 ID=TCONS_00040290|Name=TCONS_00040290|organism=Clytia hemisphaerica|type=transcript|length=2222bp|location=Sequence derived from alignment at sc0002380:10273..12494+ (Clytia hemisphaerica)
cgctaaattgaaagaaaaagcaaaaacattGTCAGGGCTGTAATTTTCTC
AAGTAGTGCTCtatattatcttttcaacggtatgtGATTTGTTAGAATTG
AGAAACTCTTTAGAATGACAGTCCAAAGAACTAGTGCACACTTGGCACTT
GAGCCAATGACTTTGGATGTCTCATTGAAAtaacaatttttcgaaatacA
CAACTTCATCATTTTTCACAAATTGACTCTCAGCGAGAATTTATATCGAG
ACATTACTATTACAGAGGAAATACACCTCGTATTACAGTGGCAATCTACG
ATCCTCCTATTTGTAACAAGATGAACAACGAAAGCTAATCAAAACAATCG
ATACTTATTCGCCAATTAATACAAAggtaaaataatttcaaaagttattt
caaTATCTTGATTTCTTAGAAACTAATTTAGTACTTTGATTGAACGGAGA
TCTAAATATGGCTATTGGAGAAGCGATCAATTGTTTATCCATATAACCTA
GATATGGAAGCTGGTCAATGTTATGAGTTTTACTGTTTCTAGCTTACAAA
TGATAGACCAAGCACAGTTTTTCACCATTGGATCACTTTAAAATTTGACG
TAAGATATCCATGCAACGCTCTTCCTGTCTCTGTCTCTNACTCCAATATA
TCAATCGACATCGAAAGAAATGGACAGATGTATAACCTCGTGAAAGAGCA
AACAATGGCTGGTACTGCGTTGAATGGCTTGGAAATCACTGGAATTCATG
GCGATATAAGTTTGTAGTTTTACAGATAACATACTTTTTACTTATTAAGT
CACTAGAATGGAACAACCTAGATCGATAGTGATTGTTTTGTTTGTCTATC
ACGTTTGAAAATGATAAACTCCAACgaccaaaatttttattaaaagaaca
ATTCTTGGAAAAGGTGTTATTTGTCTAAGAGACTTGTTACAAAGATTTGA
TTATGTAAGCCCAATTTCAACTTGAtgctttttgttttggtttcttgCAG
AAGCTTTACGCCAAGTTAAAACACGTCACCGAGCTCACAGTTTTTAACAC
CCACCCTGGGATTTCGCAAATATTACAATGCAACTGCAAGCATGAGCGGG
CAACGCGATAATCTACTAacggtgaaaattgctcaatcTCAACTCCCCCC
AAATTTCACTGTCATCATCGAGCCACTCAAAAGAGTCGGCAGAACAAGGG
CATTGCGTTGGAATTGACATCTGTTCATCAAGTTTGAATTGACTCTTACC
GGACAGTGAGATATTCATGCGCACCTTGGCGTAGAATAAAACATCTTGTG
TCAACATTGGTGAAGAGTTCATACAGAAATGGAAATGCTAATCGACGGAT
GAAAACAATAGGCTCAGCAACTAGAGAAGAGAAAATAGCCACTTGATCGT
GAGTATATTGTAGTTTGTTATACGCCTCGAATAATGGTTATATGTtgatg
aattttattttctttccaacgCCTCGATTGACCAATAAAACTCTTCGACG
TGGTCATTTTTCAGGACtactggtaatgaatttacaacaaCGGGAATATA
GATCTtctgaaaaattgtgaaaaagatcttgattgaaatcaaatttgaaa
atagaaaatactTACAGCCTCTAAATGAGGATATATATCTCATGCTGCCT
TATATAAACAAAAGCTCATTTTGTCACGGTCGATACTTCAGCTATTATTA
TACCCTCTCAGCTAATACTACCAGCGCAATCGATTGAAAATGCTTTGGGT
CCTTTTTAAACTAATTATTTTTGATGTCAATATTCAGAACTAACACCTGG
AATGAGGTTTTCcaaaaagtcttcaaaaataATTATGAACTGTTTAATCT
AGCATGCCATGAATAGTAGATAATTGTGTGATTTCGTGGTATCAAATCTG
AAGAATGATTTTAACCATACACTTAAGGCTataaaaaacaatcattttta
TCGGATTAAAGGAGCATATGTCATTTCTAAGCAAATTTccgtttgaaaat
tttttcccatCAAACGATCCGCATAGTTAAACTTCTTGTTTGACCAAATA
TTACATATTACGCATTGTTCATTCTAGATTCACTTACTTgatcaaaaatt
gtcaaaaaatgtcAGTGTCTCCCAGCTTGACAGGAATCATAAACCATAAA
CCATTGCATTATTGTCCCATAGTAGTGGATCTACGTTTAACCATAATTTT
TATAACTATTCATGCATATGcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040290-exon-sc0002380-1491911889:10273..10648 | TCONS_00040290-exon-sc0002380-1491911889:10273..10648 | Clytia hemisphaerica | exon |
| TCONS_00040290-exon-sc0002380-1510915933:10273..10648 | TCONS_00040290-exon-sc0002380-1510915933:10273..10648 | Clytia hemisphaerica | exon |
| TCONS_00040290-exon-sc0002380-1575043694:10273..10648 | TCONS_00040290-exon-sc0002380-1575043694:10273..10648 | Clytia hemisphaerica | exon |
| TCONS_00040290-exon-sc0002380-1491911889:10815..12494 | TCONS_00040290-exon-sc0002380-1491911889:10815..12494 | Clytia hemisphaerica | exon |
| TCONS_00040290-exon-sc0002380-1510915933:10815..12494 | TCONS_00040290-exon-sc0002380-1510915933:10815..12494 | Clytia hemisphaerica | exon |
| TCONS_00040290-exon-sc0002380-1575043694:10815..12494 | TCONS_00040290-exon-sc0002380-1575043694:10815..12494 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002380 | supercontig | sc0002380:10273..12494 + |
Blast
The following BLAST results are available for this feature:
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