TCONS_00040289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040289
Unique NameTCONS_00040289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040289 ID=TCONS_00040289|Name=TCONS_00040289|organism=Clytia hemisphaerica|type=transcript|length=509bp
GTCTACAAACcacaaatgaaaatatattagTTTCTAATATTATGGATTCC
AGTTTATATGGAAGGGACActttattaaatgaaaatatatGCTTTAAACa
atcagaaaattattttcttcagTAAAGTTTAAGTTTTGATACAAATGAAA
GTTGTTCACACAATTGAAACATCAGCGCAGTTTACAAAATGTTCTTGAGT
GCCATGCCCCATGCCACACCCATTTTTATCACAATCCCAATtatttgcac
ctttgtaccaccATTGTAAAACACATCTTTTACATTTCAAACCTGCAGGC
AATTTCAATTTGATATCGAATTTCTGCTTGCCATATCTCGGTACAGTAAA
CCGAGTTCCACCACCAACCTGTGAATAGAAAGCACACCTCTTTCTCAGAA
GTAGAaagcacacccctgtctcagaaaTAGAAAGCACACACCTGTCTCAG
AAGTAGAAAGcatacccctgtctcagaaATAGAAAGcatacccctgtctc
agaaGTAGA
Run BLAST on NCBI

transcript from alignment at sc0002379:6818..7404+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040289 ID=TCONS_00040289|Name=TCONS_00040289|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at sc0002379:6818..7404+ (Clytia hemisphaerica)
GTCTACAAACcacaaatgaaaatatattagTTTCTAATATTATGGATTCC
AGTTTATATGGAAGGGACActttattaaatgaaaatatatGCTTTAAACa
atcagaaaattattttcttcagTAAAGTTTAAGTTTTGATACAAATGAAA
GTTGTTCACACAATTGAAACATCAGCGCAGTTTACAAAATGTTCTTGAGT
GCCATGCCCCATGCCACACCCATTTTTATCACAATCCCAATtatttgcac
ctttgtaccaccATTGTAAAACACATCTTTTACATTTCAAACCTGCAGGC
AATTTCAATTTGATATCGAATTTCTGCTTGCCATATCTCGGTACAGTAAA
CCGAGTTCCACCACCAACCTGTGAATAGAAAGCACACCTCTTTCTCAGAA
GTAGAaagcacacccctgtctcagaaaTAGAAAGCACACACCTGTCTCAG
AAGTAGAAAGcatacccctgtctcagaaGTAGAaagcacacccctgtctc
agaaaTAGAAAGCACACCCCTGTCTAAGAGATAGAAAGCATACCCCTGTC
TAAGAGATAGAAAGcatacccctgtctcagaaGTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024459XLOC_024459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040289-exon-sc0002379-1491911889:6818..7295TCONS_00040289-exon-sc0002379-1491911889:6818..7295Clytia hemisphaericaexon
TCONS_00040289-exon-sc0002379-1510915933:6818..7295TCONS_00040289-exon-sc0002379-1510915933:6818..7295Clytia hemisphaericaexon
TCONS_00040289-exon-sc0002379-1575043694:6818..7295TCONS_00040289-exon-sc0002379-1575043694:6818..7295Clytia hemisphaericaexon
TCONS_00040289-exon-sc0002379-1491911889:7374..7404TCONS_00040289-exon-sc0002379-1491911889:7374..7404Clytia hemisphaericaexon
TCONS_00040289-exon-sc0002379-1510915933:7374..7404TCONS_00040289-exon-sc0002379-1510915933:7374..7404Clytia hemisphaericaexon
TCONS_00040289-exon-sc0002379-1575043694:7374..7404TCONS_00040289-exon-sc0002379-1575043694:7374..7404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002379supercontigsc0002379:6818..7404 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0996547	0.123438	0	0.15752	26.2692	31.9366	11.6172	27.096	1.06532	1.91086	169.083	170.619	30.7574	26.1008	56.0002	59.4182	75.4199	80.2287	0	0	0.262517	0.133732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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