TCONS_00040288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040288
Unique NameTCONS_00040288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040288 ID=TCONS_00040288|Name=TCONS_00040288|organism=Clytia hemisphaerica|type=transcript|length=562bp
gcaaatctctggacaaaggaaatatagcttattaagcatcctctataagg
agcacgaatccgttagtggatgccagcagcctacacACACACAGCAAATC
CTACAATTTTCACttcatgatttcttttttcagattcaaGAGTACAAGGA
GAGACAAAACATACACACGGCTCAACTTGAGGAACTGGACCAATTACGTC
TGATCGAATTGCAAGAAAGAAGAGCAATGCAAAGATGCCATGACATGGAA
AGAGTGAAATATCGAGACGAAGTGCGCACGGAGAAATTGGAAGACCTTCG
ACAACAGAAATTCAACGAAGAAATGGAAcaagttgaaaaagaaaaacgga
TGAAAAAGATCACAGAACAGATTAACTCAAATGTCAAGGAAGATGCAAAT
CGTATATATGAACCAACACAGacgACATTAGCTCACACGCGTGTTGAAGA
TCATGTGGAACGTGACGCAAAAGCTCCCTTGTTCAATGTATATACGTACA
ACGTAAACCAGtgcgtacgtactacgTGGACGACCCCAAAGGAGGATGGG
ATTGCAAGTCGC
Run BLAST on NCBI

protein sequence of TCONS_00040288-protein

>TCONS_00040288-protein ID=TCONS_00040288-protein|Name=TCONS_00040288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
QISGQRKYSLLSILYKEHESVSGCQQPTHTQQILQFSLHDFFFQIQEYKE
RQNIHTAQLEELDQLRLIELQERRAMQRCHDMERVKYRDEVRTEKLEDLR
QQKFNEEMEQVEKEKRMKKITEQINSNVKEDANRIYEPTQTTLAHTRVED
HVERDAKAPLFNVYTYNVNQCVRTTWTTPKEDGIASR
Run BLAST on NCBI

transcript from alignment at sc0002378:2602..4392-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040288 ID=TCONS_00040288|Name=TCONS_00040288|organism=Clytia hemisphaerica|type=transcript|length=1791bp|location=Sequence derived from alignment at sc0002378:2602..4392- (Clytia hemisphaerica)
GCAAATCTCTGGACAAAGGAAATATAGCTTATTAAGCATCCTCTATAAGG
AGCACGAATCCGTTAGTGGATGCCAGCAGCCTACACACACACAGCAAATC
CTACAATTTTCACTTCATGATTTCTTTTTTCAGATTCAAGAGTACAAGGA
GAGACAAAACATACACACGGCTCAACTTGAGGAACTGGACCAATTACGTC
TGATCGAATTGCAAGAAAGAAGAGCAATGCAAAGATGCCATGACATGGAA
AGGTAAAAAACGCTTCGATGTTTCTTCTTGGATTTCGTTGATAGCGCTCT
GATGTGTAGGATCAATTTGATAGAGAGCAAGCTTTAATTGAGACTTGAGA
GAACTAGAAGAATTTGACCTCTTTAACCTTTAATGTAAAGTTAAGTTACT
CCCATAAACTAACCTCGCTTATCTTGCTATAAAGTTATGTGACCCAAACA
CGTTTAGGCTTTTATCTTCAATTGACCAAATTTTAATATCGATGTTTGTT
TATTCAGAGTGAAATATCGAGACGAAGTGCGCACGGAGAAATTGGAAGAC
CTTCGACAACAGAAATTCAACGAAGAAATGGAACAAGTTGAAAAAGAAAA
ACGGATGAAAAAGATCACAGAACAGGTCTGTGTTTTTAGGGAGGTATCCT
CTGATTTAATCACTTTCTCAAAATGAATAACTTTTGGAAATTTCAAAAAA
AGGATTTTGGGGCATGGATTTATTTAAAAAGCGAGGGGCATTTATTAGAA
AAGTATTTTTTCGTTCAACCTTCATACCAAGAAGTGTTGTGTATTATAAT
TCTGCAGAAGTAGATTTTATTCAAGTGTTTAACTTCAAATTTAGATTAAC
TCAAATGTCAAGGAAGATGCAAATCGTATATATGAACCAACACAGGTATG
GGCCATCAAAATTCTCGTTCTAATTCCCATTCTAAATCTTTTCTTACGTT
CTACTTTTCTTCTTTAATTACAATTTTATCGTGTGCTATCAATCAATTTT
TACAATGCTATCATTCATGTTCATTTTTTCTTTTTAGACGACATTAGCTC
ACACGCGTGTTGAAGATCATGTGGAACGTGACGCAAAAGCTCCCTTGTTC
AATGTATATACGTACAACGTAAACCAGGTCAGTAATAAGTTGATTATCTC
GAGTATAGTTGTGTATTCCGTGTTTCAATAGCGCTCCGCCCGGTACACGT
CAGTTATTTTAACTCAAGTTTGTATGAGTTCCAAACCCATAGTTCATTTC
AAAATGATTTAAAAACCGTGAAAGTTATTACCTTTCTTTTGATATTGTAA
GTAATTAATGTGTGCGAGGAATTAACGCAAAGGGGCCGTCTACATAGTAC
GTACGCACTAAAATATCAAAAATCGAGTACCCCCTCCCCCCAGCACGCAA
GCGTACGCAAATGGCTATACCCCCTGATAAGTACGTACTTTTTCATTCAC
CCCCCCCCCTCTCTCCCGGCAGAAAAGAATTTCAATTTCTAGTTCGGACC
TATATTTCTTGTAGGAAACTCAATGTTTAAGAAACTTTTTCTTTCTCCTT
NTTTTTCACCCCCCCCCCCCCCCTCTCGGTTGAAGAAAATTTCGAACTCA
AATCGTTTGGTTCGGGTCTTTATTTCATACATGAAACTCAATGTTTATTA
AGAAACTTTTTCTTTTCCTTGATGCGTATAAGAAGCGTAAAAATCATACG
TACATTTTCCTTTGACCCCTCCCCTCCCCTCCCCCCTTAGTGCGTACGTA
CTACGTGGACGACCCCAAAGGAGGATGGGATTGCAAGTCGC

Coding sequence (CDS) from alignment at sc0002378:2602..4392-

>TCONS_00040288 ID=TCONS_00040288|Name=TCONS_00040288|organism=Clytia hemisphaerica|type=CDS|length=2805bp|location=Sequence derived from alignment at sc0002378:2602..4392- (Clytia hemisphaerica)
TGCGTACGTACTACGTGGACGACCCCAAAGGAGGATGGGATTGCAAGTCG
CACGACATTAGCTCACACGCGTGTTGAAGATCATGTGGAACGTGACGCAA
AAGCTCCCTTGTTCAATGTATATACGTACAACGTAAACCAGATTAACTCA
AATGTCAAGGAAGATGCAAATCGTATATATGAACCAACACAGAGTGAAAT
ATCGAGACGAAGTGCGCACGGAGAAATTGGAAGACCTTCGACAACAGAAA
TTCAACGAAGAAATGGAACAAGTTGAAAAAGAAAAACGGATGAAAAAGAT
CACAGAACAGCAAATCTCTGGACAAAGGAAATATAGCTTATTAAGCATCC
TCTATAAGGAGCACGAATCCGTTAGTGGATGCCAGCAGCCTACACACACA
CAGCAAATCCTACAATTTTCACTTCATGATTTCTTTTTTCAGATTCAAGA
GTACAAGGAGAGACAAAACATACACACGGCTCAACTTGAGGAACTGGACC
AATTACGTCTGATCGAATTGCAAGAAAGAAGAGCAATGCAAAGATGCCAT
GACATGGAAAGTGCGTACGTACTACGTGGACGACCCCAAAGGAGGATGGG
ATTGCAAGTCGCACGACATTAGCTCACACGCGTGTTGAAGATCATGTGGA
ACGTGACGCAAAAGCTCCCTTGTTCAATGTATATACGTACAACGTAAACC
AGATTAACTCAAATGTCAAGGAAGATGCAAATCGTATATATGAACCAACA
CAGAGTGAAATATCGAGACGAAGTGCGCACGGAGAAATTGGAAGACCTTC
GACAACAGAAATTCAACGAAGAAATGGAACAAGTTGAAAAAGAAAAACGG
ATGAAAAAGATCACAGAACAGCAAATCTCTGGACAAAGGAAATATAGCTT
ATTAAGCATCCTCTATAAGGAGCACGAATCCGTTAGTGGATGCCAGCAGC
CTACACACACACAGCAAATCCTACAATTTTCACTTCATGATTTCTTTTTT
CAGATTCAAGAGTACAAGGAGAGACAAAACATACACACGGCTCAACTTGA
GGAACTGGACCAATTACGTCTGATCGAATTGCAAGAAAGAAGAGCAATGC
AAAGATGCCATGACATGGAAAGTGCGTACGTACTACGTGGACGACCCCAA
AGGAGGATGGGATTGCAAGTCGCACGACATTAGCTCACACGCGTGTTGAA
GATCATGTGGAACGTGACGCAAAAGCTCCCTTGTTCAATGTATATACGTA
CAACGTAAACCAGATTAACTCAAATGTCAAGGAAGATGCAAATCGTATAT
ATGAACCAACACAGAGTGAAATATCGAGACGAAGTGCGCACGGAGAAATT
GGAAGACCTTCGACAACAGAAATTCAACGAAGAAATGGAACAAGTTGAAA
AAGAAAAACGGATGAAAAAGATCACAGAACAGCAAATCTCTGGACAAAGG
AAATATAGCTTATTAAGCATCCTCTATAAGGAGCACGAATCCGTTAGTGG
ATGCCAGCAGCCTACACACACACAGCAAATCCTACAATTTTCACTTCATG
ATTTCTTTTTTCAGATTCAAGAGTACAAGGAGAGACAAAACATACACACG
GCTCAACTTGAGGAACTGGACCAATTACGTCTGATCGAATTGCAAGAAAG
AAGAGCAATGCAAAGATGCCATGACATGGAAAGTGCGTACGTACTACGTG
GACGACCCCAAAGGAGGATGGGATTGCAAGTCGCACGACATTAGCTCACA
CGCGTGTTGAAGATCATGTGGAACGTGACGCAAAAGCTCCCTTGTTCAAT
GTATATACGTACAACGTAAACCAGATTAACTCAAATGTCAAGGAAGATGC
AAATCGTATATATGAACCAACACAGAGTGAAATATCGAGACGAAGTGCGC
ACGGAGAAATTGGAAGACCTTCGACAACAGAAATTCAACGAAGAAATGGA
ACAAGTTGAAAAAGAAAAACGGATGAAAAAGATCACAGAACAGCAAATCT
CTGGACAAAGGAAATATAGCTTATTAAGCATCCTCTATAAGGAGCACGAA
TCCGTTAGTGGATGCCAGCAGCCTACACACACACAGCAAATCCTACAATT
TTCACTTCATGATTTCTTTTTTCAGATTCAAGAGTACAAGGAGAGACAAA
ACATACACACGGCTCAACTTGAGGAACTGGACCAATTACGTCTGATCGAA
TTGCAAGAAAGAAGAGCAATGCAAAGATGCCATGACATGGAAAGTGCGTA
CGTACTACGTGGACGACCCCAAAGGAGGATGGGATTGCAAGTCGCACGAC
ATTAGCTCACACGCGTGTTGAAGATCATGTGGAACGTGACGCAAAAGCTC
CCTTGTTCAATGTATATACGTACAACGTAAACCAGATTAACTCAAATGTC
AAGGAAGATGCAAATCGTATATATGAACCAACACAGAGTGAAATATCGAG
ACGAAGTGCGCACGGAGAAATTGGAAGACCTTCGACAACAGAAATTCAAC
GAAGAAATGGAACAAGTTGAAAAAGAAAAACGGATGAAAAAGATCACAGA
ACAGCAAATCTCTGGACAAAGGAAATATAGCTTATTAAGCATCCTCTATA
AGGAGCACGAATCCGTTAGTGGATGCCAGCAGCCTACACACACACAGCAA
ATCCTACAATTTTCACTTCATGATTTCTTTTTTCAGATTCAAGAGTACAA
GGAGAGACAAAACATACACACGGCTCAACTTGAGGAACTGGACCAATTAC
GTCTGATCGAATTGCAAGAAAGAAGAGCAATGCAAAGATGCCATGACATG
GAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024458XLOC_024458Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040288-proteinTCONS_00040288-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040288-exon-sc0002378-1575043694:4141..4392TCONS_00040288-exon-sc0002378-1575043694:4141..4392Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1575043694:3768..3885TCONS_00040288-exon-sc0002378-1575043694:3768..3885Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1575043694:3498..3548TCONS_00040288-exon-sc0002378-1575043694:3498..3548Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1575043694:3266..3355TCONS_00040288-exon-sc0002378-1575043694:3266..3355Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1575043694:2602..2652TCONS_00040288-exon-sc0002378-1575043694:2602..2652Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1510915933:4141..4392TCONS_00040288-exon-sc0002378-1510915933:4141..4392Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1510915933:3768..3885TCONS_00040288-exon-sc0002378-1510915933:3768..3885Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1510915933:3498..3548TCONS_00040288-exon-sc0002378-1510915933:3498..3548Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1510915933:3266..3355TCONS_00040288-exon-sc0002378-1510915933:3266..3355Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1510915933:2602..2652TCONS_00040288-exon-sc0002378-1510915933:2602..2652Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1491911889:4141..4392TCONS_00040288-exon-sc0002378-1491911889:4141..4392Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1491911889:3768..3885TCONS_00040288-exon-sc0002378-1491911889:3768..3885Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1491911889:3498..3548TCONS_00040288-exon-sc0002378-1491911889:3498..3548Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1491911889:3266..3355TCONS_00040288-exon-sc0002378-1491911889:3266..3355Clytia hemisphaericaexon
TCONS_00040288-exon-sc0002378-1491911889:2602..2652TCONS_00040288-exon-sc0002378-1491911889:2602..2652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002378supercontigsc0002378:2602..4392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3423	14.0031	3.7652	2.32275	7.54739	4.49893	5.76343	7.25845	2.39889	3.50735	2.84013	1.8283	2.00849	1.62398	1.0535	1.0967	0.781605	1.61747	2.0589	1.21269	2.24883	0.989828	5.98287	5.84147	6.77662	8.68451	0.747352	1.07483	3.58902	4.53588
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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