TCONS_00040287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040287
Unique NameTCONS_00040287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040287 ID=TCONS_00040287|Name=TCONS_00040287|organism=Clytia hemisphaerica|type=transcript|length=369bp
TGGCATTGCCTCAGCAACCTTTTTTCTGTAGAGCTCCAGAAATCTTTCAT
TGGACCAAAGATAGTTGGGTATTTGAGACAATCTCGGAGGTGTTGTTTGC
TGTTGGTGATGATCTGATGTGTTCTCGAGAAATAAGGAAGTGGAAACTGG
AAGATGGTCACTGGTATTCTCAGGCGCTGGTTCTATTACCGCAGTCTCGG
ATGTCATATTTGCAATGTCTTGTGAAACAAGAATGTGAACAATGTACGAT
TTATTTGGTAGGGTATGGTGATGATATGTGTATGATGGGCCTGTTCCGTT
CATGATATCAATTGCAATCAGATCCATTTCGTTTATGAAGTTTgtaagaa
attttgaaagggTGTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00040287-protein

>TCONS_00040287-protein ID=TCONS_00040287-protein|Name=TCONS_00040287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
LNTLSKFLTNFINEMDLIAIDIMNGTGPSYTYHHHTLPNKSYIVHILVSQ
DIANMTSETAVIEPAPENTSDHLPVSTSLFLENTSDHHQQQTTPPRLSQI
PNYLWSNERFLELYRKKVAEAMP
Run BLAST on NCBI

transcript from alignment at sc0002377:3556..3924

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040287 ID=TCONS_00040287|Name=TCONS_00040287|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at sc0002377:3556..3924 (Clytia hemisphaerica)
CTCAACAccctttcaaaatttcttacAAACTTCATAAACGAAATGGATCT
GATTGCAATTGATATCATGAACGGAACAGGCCCATCATACACATATCATC
ACCATACCCTACCAAATAAATCGTACATTGTTCACATTCTTGTTTCACAA
GACATTGCAAATATGACATCCGAGACTGCGGTAATAGAACCAGCGCCTGA
GAATACCAGTGACCATCTTCCAGTTTCCACTTCCTTATTTCTCGAGAACA
CATCAGATCATCACCAACAGCAAACAACACCTCCGAGATTGTCTCAAATA
CCCAACTATCTTTGGTCCAATGAAAGATTTCTGGAGCTCTACAGAAAAAA
GGTTGCTGAGGCAATGCCA

Coding sequence (CDS) from alignment at sc0002377:3556..3924

>TCONS_00040287 ID=TCONS_00040287|Name=TCONS_00040287|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0002377:3556..3924 (Clytia hemisphaerica)
CTCAACAccctttcaaaatttcttacAAACTTCATAAACGAAATGGATCT
GATTGCAATTGATATCATGAACGGAACAGGCCCATCATACACATATCATC
ACCATACCCTACCAAATAAATCGTACATTGTTCACATTCTTGTTTCACAA
GACATTGCAAATATGACATCCGAGACTGCGGTAATAGAACCAGCGCCTGA
GAATACCAGTGACCATCTTCCAGTTTCCACTTCCTTATTTCTCGAGAACA
CATCAGATCATCACCAACAGCAAACAACACCTCCGAGATTGTCTCAAATA
CCCAACTATCTTTGGTCCAATGAAAGATTTCTGGAGCTCTACAGAAAAAA
GGTTGCTGAGGCAATGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024457XLOC_024457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040287-exon-sc0002377-1491911889:3556..3924TCONS_00040287-exon-sc0002377-1491911889:3556..3924Clytia hemisphaericaexon
TCONS_00040287-exon-sc0002377-1510915933:3556..3924TCONS_00040287-exon-sc0002377-1510915933:3556..3924Clytia hemisphaericaexon
TCONS_00040287-exon-sc0002377-1575043694:3556..3924TCONS_00040287-exon-sc0002377-1575043694:3556..3924Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040287-proteinTCONS_00040287-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002377supercontigsc0002377:3556..3924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0474509	0	0	0	0.598046	0.594438	0	0	0.274973	0	0.482736	0.607117	0.246683	0.459446	0.185702	0	0.150425	0	0.0455673	0	0	0	0.254238	0	1.35125	0	0	0.324484	0	0.267874
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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