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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040286 ID=TCONS_00040286|Name=TCONS_00040286|organism=Clytia hemisphaerica|type=transcript|length=883bp
GAATTTGGCCATCACTTCCAATCCGTTTTGAACGAACCTAGAGTCCAACA
TATTGACAATGAATAAACAAACGCTCAATTACTGCGAATCCTACAGGAAC
TACCATACAACTCAGAATTCCACATAACCGAGATCGAAGTAGAGAACGCC
ATAAATAGACTCAACAAAAACAAGACTATGGACCCATACCATCTGAAAGC
AGAACACTTCGTACATGCCTCAAGTAACATTTTCATAACAGAAATAACTA
AAATCATCAATAATATCTTCAAAACTAGAACACCAGAAGCTCTAAGTGTA
TCAATAATAGTTCCATTGGTGAAATCTTACCGTAAATCTCTTACTGATCC
TAAAAATTACAGGGGGGGATCAGTCTCGTACCAATCCTAACAaagatttt
agaaaacattatCCTAGAAAAATGTTTATTCTTAAAATCGCCATCACAAT
CACAGTTTGGATTCACTCAAAAATCGTCAACTACTCATGCAGAAATCTTA
ATCCAAGACACTATCAGGTTTTATAACAGTAAAGACTCACCTGTTTACAT
TTGCAGCTTGGATGCTTCCAAGGCTTTCGACAGCTGTAATTGgcttaaac
tttttgaaaaactagGAGATAACGAATCAATACCAAAACCAATTCTCAAA
TTTCTCATTGACTCATACCTCAAAAGCAAATCGACTGTTGTTTATGGTAA
CGTTGAATCAGAACCCTTCAACCTAACACAGGGGGTTAAACAGGGATCGA
TCCTTTCTCCATATCTTTACAATAAATATACAGAGACTCTCATTGCAGAA
ATTTTAAACCTTCAGATCGGGACTCACCTACCAGATGGTACAAATACATC
CATTATAGCATTTGCTGATGACCTGATCCTGAC Run BLAST on NCBI transcript from alignment at sc0002377:4349..5788+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040286 ID=TCONS_00040286|Name=TCONS_00040286|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at sc0002377:4349..5788+ (Clytia hemisphaerica)
GAATTTGGCCATCACTTCCAATCCGTTTTGAACGAACCTAGAGTCCAACA
TATTGACAATGAATAAACAAACGCTCAATTACTGCGAATCCTACAGGAAC
TACCATACAACTCAGAATTCCACATAACCGAGATCGAAGTAGAGAACGCC
ATAAATAGACTCAACAAAAACAAGACTATGGACCCATACCATCTGAAAGC
AGAACACTTCGTACATGCCTCAAGTAACATTTTCATAACAGAAATAACTA
AAATCATCAATAATATCTTCAAAACTAGAACACCAGAAGCTCTAAGTGTA
TCAATAATAGTTCCATTGGTGAAATCTTACCGTAAATCTCTTACTGATCC
TAAAAATTACAGGGGGGGATCAGTCTCGTACCAATCCTAACAaagatttt
agaaaacattatCCTAGAAAAATGTTTATTCTTAAAATCGCCATAACAAT
CACCGTTTGGATTCACTCAAAAATCGTCAACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAa
agattttagaaaacattatCCTAGAAAAATGTTTATTCTTAAAATCGCCA
TCACAATCACAGTTTGGATTCACTCAAAAATCGTCAACTACTCATGCAGA
AATCTTAATCCAAGACACTATCAGGTTTTATAACAGTAAAGACTCACCTG
TTTACATTTGCAGCTTGGATGCTTCCAAGGCTTTCGACAGCTGTAATTGg
cttaaactttttgaaaaactagGAGATAACGAATCAATACCAAAACCAAT
TCTCAAATTTCTCATTGACTCATACCTCAAAAGCAAATCGACTGTTGTTT
ATGGTAACGTTGAATCAGAACCCTTCAACCTAACACAGGGGGTTAAACAG
GGATCGATCCTTTCTCCATATCTTTACAATAAATATACAGAGACTCTCAT
TGCAGAAATTTTAAACCTTCAGATCGGGACTCACCTACCAGATGGTACAA
ATACATCCATTATAGCATTTGCTGATGACCTGATCCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040286-exon-sc0002377-1491911889:4349..4755 | TCONS_00040286-exon-sc0002377-1491911889:4349..4755 | Clytia hemisphaerica | exon |
| TCONS_00040286-exon-sc0002377-1510915933:4349..4755 | TCONS_00040286-exon-sc0002377-1510915933:4349..4755 | Clytia hemisphaerica | exon |
| TCONS_00040286-exon-sc0002377-1575043694:4349..4755 | TCONS_00040286-exon-sc0002377-1575043694:4349..4755 | Clytia hemisphaerica | exon |
| TCONS_00040286-exon-sc0002377-1491911889:5313..5788 | TCONS_00040286-exon-sc0002377-1491911889:5313..5788 | Clytia hemisphaerica | exon |
| TCONS_00040286-exon-sc0002377-1510915933:5313..5788 | TCONS_00040286-exon-sc0002377-1510915933:5313..5788 | Clytia hemisphaerica | exon |
| TCONS_00040286-exon-sc0002377-1575043694:5313..5788 | TCONS_00040286-exon-sc0002377-1575043694:5313..5788 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002377 | supercontig | sc0002377:4349..5788 + |
Blast
The following BLAST results are available for this feature:
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