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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040284 ID=TCONS_00040284|Name=TCONS_00040284|organism=Clytia hemisphaerica|type=transcript|length=885bp
AAATGTATGGGGTATGGTTGCTCAGTAACAGATACAATTAAATTGATATT
TAACAGTGAGCtttggtcaaaaatgaactttttaacATTTGAGTAACAGA
GTCGgttaaaatcttattttaagtgataaaaacaaagaattgTATGGATG
TTTTGATCCAAATAAGAAAACAATCCTCCTCAGAGATACAGGTGACAACT
TTAGAGCAGCTATGCGATATCCAACTGAACAGACGTCATTCTCTCTTATG
AATATTTCTGAAATGGTGAATTACCCCTATGGACAGTTTATAACGACACT
ATGGAGGGGGGAAAGAGAGCagagaaaaattggaaattcaCGTTATGGAA
TATCATAAAGAATTAAATGAAATGGTTAAAAATGGTTTAACTGTTGAGCT
TGGAAATGAGATGGTCTCGTTTAATATAATTGTATTCCTTGTGGCTGACC
TTAGCTTCACAAAGGAAATTTTAGGGCGTTGTTCAAGTACGCACACTTAT
GGATGTAATCGCTGTAAACTTCCAATTCAGAAATGGTCCGAAAAGAGATT
GAATACTGGTACCCCTCAATCGATTAATGACATGACAAAACTTGGAAACG
AAGCATTGCAGACTCTTGGAAAATCCCCTGACAAGAACTCACAAGCGTAC
AAAAAATTTACCCAAAAGTCTTTTGGCCAATGGgGTCCTGTTTTGCTGGA
TGGTTTGATTATTGAATTTGTTGCACCTTGCTCCTTGCACCTCATTCTTG
CTGTCCATCGCTACCTGTGGAAATTTCTTCATGACATAATAGTGAAACGT
AAACAAGAAAATCTTGTCTCAACTGCCATGCGAAAAATCGGTTGTTATTA
TTTAGCTTATCAGTTGGATTCTTACTTAAAGAGGT Run BLAST on NCBI protein sequence of TCONS_00040284-protein >TCONS_00040284-protein ID=TCONS_00040284-protein|Name=TCONS_00040284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MEYHKELNEMVKNGLTVELGNEMVSFNIIVFLVADLSFTKEILGRCSSTH
TYGCNRCKLPIQKWSEKRLNTGTPQSINDMTKLGNEALQTLGKSPDKNSQ
AYKKFTQKSFGQWGPVLLDGLIIEFVAPCSLHLILAVHRYLWKFLHDIIV
KRKQENLVSTAMRKIGCYYLAYQLDSYLKR Run BLAST on NCBI transcript from alignment at sc0002376:10537..11720+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040284 ID=TCONS_00040284|Name=TCONS_00040284|organism=Clytia hemisphaerica|type=transcript|length=1184bp|location=Sequence derived from alignment at sc0002376:10537..11720+ (Clytia hemisphaerica)
AAATGTATGGGGTATGGTTGCTCAGTAACAGATACAATTAAATTGATATT
TAACAGTGAGCtttggtcaaaaatgaactttttaacATTTGAGTAACAGA
GTCGgttaaaatcttattttaagtgataaaaacaaagaattgTATGGATG
TTTTGATCCAAATAAGAAAACAATCCTCCTCAGAGATACAGGTGACAACT
TTAGAGCAGCTATGCGATATCCAACTGAACAGACGTCATTCTCTCTTATG
AATATTTCTGAAATGGTGAATTACCCCTATGGACAGTTTATAACGACACT
ATGGAGGGGGGAAAGAGAGCagagaaaaattggaaattcaCGTTATGGAA
TATCATAAAGAATTAAATGAAATGGTTAAAAATGGTTTAACTGTTGAGCT
TGGAAATGAGATGGTCTCGTTTAATATAATTGTATTCCTTGTGGCTGACC
TTAGCTTCACAAAGGAAATTTTAGGGCGTTGTTCAAGTACGCACACTTAT
GGATGTAATCGCTGTAAACTTCCAATTCAGAAATGGTCCGAAAAGAGATT
GAATACTGGTACCCCTCAATCGATTAATGACATGACAAAACTTGGAAACG
AAGCATTGCAGACTCTTGGAAAATCCCCTGACAAGAACTCACAAGCGTAC
AAAAAATTTACCCAAAAGTCTTTTGGCCAATGGGTGagtgtttaaaattt
ttggatataGTTAATGTTATTTCATATTTCCGATTTTTGGCATAGGCTGA
GAAACTTTTGCCACCAAAATCTACACTTGAGGTGTATTAGTAAAACCTTG
TTTGCATTTTGTCatgaaaaactaaaattaaTTGTTCGAGAAAAGGTTGT
TGgaatcaaaatcacaaaaacattattttgataaatctgcTCTATCAGCA
TAGGCTACACGCCAGAATTCTAGTGTCGtgaatttgatgaagaataATAA
TATCTTattaaagtaaatattttgattttcaggGTCCTGTTTTGCTGGAT
GGTTTGATTATTGAATTTGTTGCACCTTGCTCCTTGCACCTCATTCTTGC
TGTCCATCGCTACCTGTGGAAATTTCTTCATGACATAATAGTGAAACGTA
AACAAGAAAATCTTGTCTCAACTGCCATGCGAAAAATCGGTTGTTATTAT
TTAGCTTATCAGTTGGATTCTTACTTAAAGAGGT Coding sequence (CDS) from alignment at sc0002376:10537..11720+ >TCONS_00040284 ID=TCONS_00040284|Name=TCONS_00040284|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0002376:10537..11720+ (Clytia hemisphaerica)
ATGGAATATCATAAAGAATTAAATGAAATGGTTAAAAATGGTTTAACTGT
TGAGCTTGGAAATGAGATGGTCTCGTTTAATATAATTGTATTCCTTGTGG
CTGACCTTAGCTTCACAAAGGAAATTTTAGGGCGTTGTTCAAGTACGCAC
ACTTATGGATGTAATCGCTGTAAACTTCCAATTCAGAAATGGTCCGAAAA
GAGATTGAATACTGGTACCCCTCAATCGATTAATGACATGACAAAACTTG
GAAACGAAGCATTGCAGACTCTTGGAAAATCCCCTGACAAGAACTCACAA
GCGTACAAAAAATTTACCCAAAAGTCTTTTGGCCAATGGgGTCCTGTTTT
GCTGGATGGTTTGATTATTGAATTTGTTGCACCTTGCTCCTTGCACCTCA
TTCTTGCTGTCCATCGCTACCTGTGGAAATTTCTTCATGACATAATAGTG
AAACGTAAACAAGAAAATCTTGTCTCAACTGCCATGCGAAAAATCGGTTG
TTATTATTTAGCTTATCAGTTGGATTCTTACTTAAAGAGGATGGAATATC
ATAAAGAATTAAATGAAATGGTTAAAAATGGTTTAACTGTTGAGCTTGGA
AATGAGATGGTCTCGTTTAATATAATTGTATTCCTTGTGGCTGACCTTAG
CTTCACAAAGGAAATTTTAGGGCGTTGTTCAAGTACGCACACTTATGGAT
GTAATCGCTGTAAACTTCCAATTCAGAAATGGTCCGAAAAGAGATTGAAT
ACTGGTACCCCTCAATCGATTAATGACATGACAAAACTTGGAAACGAAGC
ATTGCAGACTCTTGGAAAATCCCCTGACAAGAACTCACAAGCGTACAAAA
AATTTACCCAAAAGTCTTTTGGCCAATGGgGTCCTGTTTTGCTGGATGGT
TTGATTATTGAATTTGTTGCACCTTGCTCCTTGCACCTCATTCTTGCTGT
CCATCGCTACCTGTGGAAATTTCTTCATGACATAATAGTGAAACGTAAAC
AAGAAAATCTTGTCTCAACTGCCATGCGAAAAATCGGTTGTTATTATTTA
GCTTATCAGTTGGATTCTTACTTAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040284-exon-sc0002376-1491911889:10537..11219 | TCONS_00040284-exon-sc0002376-1491911889:10537..11219 | Clytia hemisphaerica | exon |
| TCONS_00040284-exon-sc0002376-1510915933:10537..11219 | TCONS_00040284-exon-sc0002376-1510915933:10537..11219 | Clytia hemisphaerica | exon |
| TCONS_00040284-exon-sc0002376-1575043694:10537..11219 | TCONS_00040284-exon-sc0002376-1575043694:10537..11219 | Clytia hemisphaerica | exon |
| TCONS_00040284-exon-sc0002376-1491911889:11519..11720 | TCONS_00040284-exon-sc0002376-1491911889:11519..11720 | Clytia hemisphaerica | exon |
| TCONS_00040284-exon-sc0002376-1510915933:11519..11720 | TCONS_00040284-exon-sc0002376-1510915933:11519..11720 | Clytia hemisphaerica | exon |
| TCONS_00040284-exon-sc0002376-1575043694:11519..11720 | TCONS_00040284-exon-sc0002376-1575043694:11519..11720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002376 | supercontig | sc0002376:10537..11720 + |
Blast
The following BLAST results are available for this feature:
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