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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040283 ID=TCONS_00040283|Name=TCONS_00040283|organism=Clytia hemisphaerica|type=transcript|length=1703bp
TAGATAAGAAAAACATGAATAAGAAAAACagtaatatttggcatggaaTC
GTCAACATAGGCTGCTTAGAATGGTTTGACAGAAACGAAGGCATTTTTTC
TCCTGGTTGGTTCACAGAGTCAGGTGTTGTTTACTCAAATGGATATGTtg
ccaaaagaaaaattaaaactgatAATGATGAATTTGATGTTACGCTAAGT
ATAGTAAAAGGTGTTGATTGTTTGCCATCATTTCGTGCGGAAATTAGACG
TCTCAATGGAAACGAAATTCAACTTGAAAAAGCTTGGACATGCAAGCGAA
AAAGTGCAAAAAACCCAACAAGTCTTGCCAAAGATGTCTATGTTGAAACT
GGTCTAAGAATTAAAGGGACAATTGTCGGTAATCGTTTTTTTGGAATATA
CACTAAAGATATACACTAACTCAAATCTACTACACAGCAGCAATACGTAG
AGGATGAAAGTAACTTTGATGACAAGAATATCGAGACTCCTAGTGAATTT
GAACCTGAATCTGTAGCAACTGAAAGCATTTTTCAAACGTTGACTATTGG
AAAAGGAAAAAACAATTAGGCTAAAGTTTTATCCTTTGGAAAAGTTTTGG
ATAATTCATTATATACATATCAAGTAAGaagttcaaaaacaaaaatatat
ctTCGACCTAGATATGAAGCCTTGCGATCAATTTATATCCCACAATTAGA
AAGTTTATGCAACATTCACTTAAATATAACTGAAACTAATAACGGACCCT
TATTTCACGGTGTCACAAACCCTCATCAATATGACTTTGAATATCACTCA
CATTCAATCAAAGAGGTAAAGGATAAAGTCTTTGATACATTCAAACTACC
TAAAAAGAATAAATGTTCTGGCTATGAATTTTTTGGTTTAACAAAGTCTg
aagttttgaaagaaatcaCAACAAACCCCAGCTCCAAGAGTGTCGAAACT
ATGGATTGAGACTGGAAATCCTCTTCCAATGAAACCCTCTCCAAAGtaaa
caatattttaaaaagaaatgcaGGGCCAACTAGCAATCTTTGCGATAAAG
CGGCCAGAAAACGAAACGAAACGATTCTTGAAATGGCCAATCAAACATCA
TTTGGAGAATttcaaaagctttgtgcaGTACCTTTTGGAGGAAGTGCCAA
ATATTGTTGACGGTGCAATTGGCGATAGTGAGGACTACCTTGTCCAATTG
GTATCTGAGCTCAGTTTGAAAACTTTACCAGCTGAGTTGGATTGTCATGA
TGCTGCTGCTTTGATGATGGGTAATTGCGATCTTTCGCAGAGATCATACA
AGGCATTGAAAAAAGCACTTTCTCTGAAGAACGTCACTATTCCTACATAT
GATAAACTTCGTGAATATTGTAAGACTTTAAATGTTGGTGAAATCAAAAT
GCTACATCAAGAGGGTTCTAATGAAAAATTATGTGATCCAAAATGTATGG
GGTATGGTTGCTCAGTAACAGATACAATTAAATTGATATTTAACAGTGAG
CtttggtcaaaaatgaactttttaacATTTGAGCAACAGAGTCGGTTAAA
ATCTTATTTaagtgataaaaacaaagaattgTATGGATGTTTTGATCCAA
ATAAGAAAACAATCCTCCTCAGAGATACAGGTGACAACTTTAGAGCAGCT
ATGCGATATCCAACTGAACAGACGTCATTCTCTCTTATGAATATTTCTGA
ANN Run BLAST on NCBI protein sequence of TCONS_00040283-protein >TCONS_00040283-protein ID=TCONS_00040283-protein|Name=TCONS_00040283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MQGQLAIFAIKRPENETKRFLKWPIKHHLENFKSFVQYLLEEVPNIVDGA
IGDSEDYLVQLVSELSLKTLPAELDCHDAAALMMGNCDLSQRSYKALKKA
LSLKNVTIPTYDKLREYCKTLNVGEIKMLHQEGSNEKLCDPKCMGYGCSV
TDTIKLIFNSELWSKMNFLTFEQQSRLKSYLSDKNKELYGCFDPNKKTIL
LRDTGDNFRAAMRYPTEQTSFSLMNISE Run BLAST on NCBI transcript from alignment at sc0002376:4408..6773+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040283 ID=TCONS_00040283|Name=TCONS_00040283|organism=Clytia hemisphaerica|type=transcript|length=2366bp|location=Sequence derived from alignment at sc0002376:4408..6773+ (Clytia hemisphaerica)
TAGATAAGAAAAACATGAATAAGAAAAACagtaatatttggcatggaaTC
GTCAACATAGGCTGCTTAGAATGGTTTGACAGAAACGAAGGCATTTTTTC
TCCTGGTTGGTTCACAGAGTCAGGTGTTGTTTACTCAAATGGATATGTtg
ccaaaagaaaaattaaaactgatAATGATGAATTTGATGTTACGCTAAGT
ATAGTAAAAGGTGTTGATTGTTTGCCATCATTTCGTGCGGAAATTAGACG
TCTCAATGGAAACGAAATTCAACTTGAAAAAGCTTGGACATGCAAGCGAA
AAAGTGCAAAAAACCCAACAAGTCTTGCCAAAGATGTCTATGTTGAAACT
GGTCTAAGAATTAAAGGGACAATTGTCGGTAATCGTTTTTTTGGAATATA
CACTAAAGATATACACTAACTCAAATCTACTACACAGCAGCAATACGTAG
AGGATGAAAGTAACTTTGATGACAAGAATATCGAGACTCCTAGTGAATTT
GAACCTGAATCTGTAGCAACTGAAAGCATTTTTCAAACGTTGACTATTGG
AAAAGGAAAAAACAATTAGGCTAAAGTTTTATCCTTTGGAAAAGTTTTGG
ATAATTCATTATATACATATCAAGTAAGaagttcaaaaacaaaaatatat
ctTCGACCTAGATATGAAGCCTTGCGATCAATTTATATCCCACAATTAGA
AAGTTTATGCAACATTCACTTAAATATAACTGAAACTAATAACGGACCCT
TATTTCACGGTGTCACAAACCCTCATCAATATGACTTTGAATATCACTCA
CATTCAATCAAAGAGGTAAAGGATAAAGTCTTTGATACATTCAAACTACC
TAAAAAGAATAAATGTTCTGGCTATGAATTTTTTGGTTTAACAAAGTCTg
aagttttgaaagaaatcaCAACAAACCCCAGCTCCAAGAGTGTCGAAACT
ATGGATTGAGACTGGAAATCCTCTTCCAATGAAACCCTCTCCAAAGtaaa
caatattttaaaaagaaatgcaGGGCCAACTAGCAATCTTTGCGATAAAG
CGGCCAGAAAACGAAACGAAACGATTCTTGAAATGGCCAATCAAACATCA
TTTGGAGAATttcaaaagtaagaaaaattttaactctTTAGTAGAATTAG
TAGAATTGATTTTCACAAAACGCTTGCAAAAAGGAATCTTTACGCTAAAA
CATACATTATTATATGTTTAAAACATACGTTATTGTGCGTTTTAAACACA
ATAACTTTTTAAGGCCAGGCTTTTACATCAGTAAGGTCACAGCAAAATTA
ACAATCAAAAAGATTAGATTTAAAGTAGTGTCTAGGTAGTTATCTTATTT
TCCCAGCTTACcttaattggattaattttcatgtggattaatttttgagt
ATAATAATTTTCGCAATAcgagaatttaaagattttgcgtggattaaatt
ttgcgaattaggccttctttatttaattttgcgactatataaatttaaaa
aatcaaacaattttagAAAAGAGGTGAGTGACAAACGTAAAACTACTTTA
TAAagcacaaaaatttgatttttttctttgattttgcaaattatttttgc
gattgtaaattttccaaaaattttgcgtgtattaaatttagCGAATAAAA
ggtcttcaaaattttcgtgtGGATTAAATTTGgggaaaatggccaaaatt
ggcaaaaaatgcGAAAATTAATTCACTTAAGGTAGAATGCACCTTAATAT
TAATCTGTTTGattgttattttattttaaggctttgtgcaGTACCTTTTG
GAGGAAGTGCCAAATATTGTTGACGGTGCAATTGGCGATAGTGAGGACTA
CCTTGTCCAATTGGTATCTGAGCTCAGTTTGAAAACTTTACCAGCTGAGT
TGGATTGTCATGATGCTGCTGCTTTGATGATGGGTAATTGCGATCTTTCG
CAGAGATCATACAAGGCATTGAAAAAAGCACTTTCTCTGAAGAACGTCAC
TATTCCTACATATGATAAACTTCGTGAATATTGTAAGACTTTAAATGTTG
GTGAAATCAAAATGCTACATCAAGAGGGTTCTAATGAAAAATTATGTGAT
CCAAAATGTATGGGGTATGGTTGCTCAGTAACAGATACAATTAAATTGAT
ATTTAACAGTGAGCtttggtcaaaaatgaactttttaacATTTGAGCAAC
AGAGTCGGTTAAAATCTTATTTaagtgataaaaacaaagaattgTATGGA
TGTTTTGATCCAAATAAGAAAACAATCCTCCTCAGAGATACAGGTGACAA
CTTTAGAGCAGCTATGCGATATCCAACTGAACAGACGTCATTCTCTCTTA
TGAATATTTCTGAANN Coding sequence (CDS) from alignment at sc0002376:4408..6773+ >TCONS_00040283 ID=TCONS_00040283|Name=TCONS_00040283|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0002376:4408..6773+ (Clytia hemisphaerica)
atgcaGGGCCAACTAGCAATCTTTGCGATAAAGCGGCCAGAAAACGAAAC
GAAACGATTCTTGAAATGGCCAATCAAACATCATTTGGAGAATttcaaaa
gctttgtgcaGTACCTTTTGGAGGAAGTGCCAAATATTGTTGACGGTGCA
ATTGGCGATAGTGAGGACTACCTTGTCCAATTGGTATCTGAGCTCAGTTT
GAAAACTTTACCAGCTGAGTTGGATTGTCATGATGCTGCTGCTTTGATGA
TGGGTAATTGCGATCTTTCGCAGAGATCATACAAGGCATTGAAAAAAGCA
CTTTCTCTGAAGAACGTCACTATTCCTACATATGATAAACTTCGTGAATA
TTGTAAGACTTTAAATGTTGGTGAAATCAAAATGCTACATCAAGAGGGTT
CTAATGAAAAATTATGTGATCCAAAATGTATGGGGTATGGTTGCTCAGTA
ACAGATACAATTAAATTGATATTTAACAGTGAGCtttggtcaaaaatgaa
ctttttaacATTTGAGCAACAGAGTCGGTTAAAATCTTATTTaagtgata
aaaacaaagaattgTATGGATGTTTTGATCCAAATAAGAAAACAATCCTC
CTCAGAGATACAGGTGACAACTTTAGAGCAGCTATGCGATATCCAACTGA
ACAGACGTCATTCTCTCTTATGAATATTTCTGAAatgcaGGGCCAACTAG
CAATCTTTGCGATAAAGCGGCCAGAAAACGAAACGAAACGATTCTTGAAA
TGGCCAATCAAACATCATTTGGAGAATttcaaaagctttgtgcaGTACCT
TTTGGAGGAAGTGCCAAATATTGTTGACGGTGCAATTGGCGATAGTGAGG
ACTACCTTGTCCAATTGGTATCTGAGCTCAGTTTGAAAACTTTACCAGCT
GAGTTGGATTGTCATGATGCTGCTGCTTTGATGATGGGTAATTGCGATCT
TTCGCAGAGATCATACAAGGCATTGAAAAAAGCACTTTCTCTGAAGAACG
TCACTATTCCTACATATGATAAACTTCGTGAATATTGTAAGACTTTAAAT
GTTGGTGAAATCAAAATGCTACATCAAGAGGGTTCTAATGAAAAATTATG
TGATCCAAAATGTATGGGGTATGGTTGCTCAGTAACAGATACAATTAAAT
TGATATTTAACAGTGAGCtttggtcaaaaatgaactttttaacATTTGAG
CAACAGAGTCGGTTAAAATCTTATTTaagtgataaaaacaaagaattgTA
TGGATGTTTTGATCCAAATAAGAAAACAATCCTCCTCAGAGATACAGGTG
ACAACTTTAGAGCAGCTATGCGATATCCAACTGAACAGACGTCATTCTCT
CTTATGAATATTTCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040283-exon-sc0002376-1491911889:4408..5524 | TCONS_00040283-exon-sc0002376-1491911889:4408..5524 | Clytia hemisphaerica | exon |
| TCONS_00040283-exon-sc0002376-1510915933:4408..5524 | TCONS_00040283-exon-sc0002376-1510915933:4408..5524 | Clytia hemisphaerica | exon |
| TCONS_00040283-exon-sc0002376-1575043694:4408..5524 | TCONS_00040283-exon-sc0002376-1575043694:4408..5524 | Clytia hemisphaerica | exon |
| TCONS_00040283-exon-sc0002376-1491911889:6188..6773 | TCONS_00040283-exon-sc0002376-1491911889:6188..6773 | Clytia hemisphaerica | exon |
| TCONS_00040283-exon-sc0002376-1510915933:6188..6773 | TCONS_00040283-exon-sc0002376-1510915933:6188..6773 | Clytia hemisphaerica | exon |
| TCONS_00040283-exon-sc0002376-1575043694:6188..6773 | TCONS_00040283-exon-sc0002376-1575043694:6188..6773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002376 | supercontig | sc0002376:4408..6773 + |
Blast
The following BLAST results are available for this feature:
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