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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040280 ID=TCONS_00040280|Name=TCONS_00040280|organism=Clytia hemisphaerica|type=transcript|length=919bp
TTTTTCACGTCATGTCTCACAAAATCCGAACTTTTGTATGAAGAAAGGGT
TAGACTGACAAATACCCTAGCAAGTTATGAGTGTCAGTCACTCTTGAGTG
TCGATTCATTGAAATCGGTTATTCAAACATTGGCACACTTCATACTTGTG
GTAAAGCCGTTTCATGCGTGTGCCTTGATGAGAGATGGAGCTGAGGTGAT
CTCCAAAGATTTCGATATGTTGACAGAGGAATGTCTTCAAGGCTACGCTA
AAGCAATGAGACCAAATGGAAGCGATATTGTTGAAAACTTGAAGCCAACC
TTTGATTCAGAAAGTCAAATCTTTAAAGAAGCTGAGCAGCGTTGTTTTGT
TTTCCTTCAAAACTTTATCGAGGAGCTCTCACAATCCGAGGCGTCAATTT
TTATGAAGTTTGTGACTGGTATGGAGATGATGCAGGAGAAAATAAATGTT
ACTTTTAATGGTCAAGACAATCCACAGATGATGTTGCCACGAGCAAGTAC
CTGTGGGTTCACTCTTCTACTCAGTCGCTCTTTCAGTGACCAAGAGCAAT
TCAACACTCTTTTTAAAAACTTATTAGAAAATCCGTCAGCATGGGAGCGG
TTTGAAGTATCTTagcttattttttattttcctaacCCAATTCATATTAg
tggaatattttattttaagagTTTTTACATGTACATAATAGTGTACTATA
GAGATTGGTCGATATTTACTTTAGTAGTTACAAAGacatagaatgcaccc
ccccTCTGAGCTTAGGGGGTTggttcatttaaaaaatactgggggctaGC
TGTTGATATTTGTTAATAATAGGAAAACCTTATTAgatgacttttatttt
tattaaaaactctCAAGCACGTTTTCTTTGAGTTTCTGTGAACAAATCCT
CAGATCAGTTCAAAAAAAT Run BLAST on NCBI protein sequence of TCONS_00040280-protein >TCONS_00040280-protein ID=TCONS_00040280-protein|Name=TCONS_00040280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
FFTSCLTKSELLYEERVRLTNTLASYECQSLLSVDSLKSVIQTLAHFILV
VKPFHACALMRDGAEVISKDFDMLTEECLQGYAKAMRPNGSDIVENLKPT
FDSESQIFKEAEQRCFVFLQNFIEELSQSEASIFMKFVTGMEMMQEKINV
TFNGQDNPQMMLPRASTCGFTLLLSRSFSDQEQFNTLFKNLLENPSAWER
FEVS Run BLAST on NCBI transcript from alignment at sc0002375:21460..22378 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040280 ID=TCONS_00040280|Name=TCONS_00040280|organism=Clytia hemisphaerica|type=transcript|length=919bp|location=Sequence derived from alignment at sc0002375:21460..22378 (Clytia hemisphaerica)
ATTTTTTTGAACTGATCTGAGGATTTGTTCACAGAAACTCAAAGAAAACG
TGCTTGagagtttttaataaaaataaaagtcatcTAATAAGGTTTTCCTA
TTATTAACAAATATCAACAGCtagcccccagtattttttaaatgaaccAA
CCCCCTAAGCTCAGAgggggggtgcattctatgtCTTTGTAACTACTAAA
GTAAATATCGACCAATCTCTATAGTACACTATTATGTACATGTAAAAAct
cttaaaataaaatattccacTAATATGAATTGGgttaggaaaataaaaaa
taagctAAGATACTTCAAACCGCTCCCATGCTGACGGATTTTCTAATAAG
TTTTTAAAAAGAGTGTTGAATTGCTCTTGGTCACTGAAAGAGCGACTGAG
TAGAAGAGTGAACCCACAGGTACTTGCTCGTGGCAACATCATCTGTGGAT
TGTCTTGACCATTAAAAGTAACATTTATTTTCTCCTGCATCATCTCCATA
CCAGTCACAAACTTCATAAAAATTGACGCCTCGGATTGTGAGAGCTCCTC
GATAAAGTTTTGAAGGAAAACAAAACAACGCTGCTCAGCTTCTTTAAAGA
TTTGACTTTCTGAATCAAAGGTTGGCTTCAAGTTTTCAACAATATCGCTT
CCATTTGGTCTCATTGCTTTAGCGTAGCCTTGAAGACATTCCTCTGTCAA
CATATCGAAATCTTTGGAGATCACCTCAGCTCCATCTCTCATCAAGGCAC
ACGCATGAAACGGCTTTACCACAAGTATGAAGTGTGCCAATGTTTGAATA
ACCGATTTCAATGAATCGACACTCAAGAGTGACTGACACTCATAACTTGC
TAGGGTATTTGTCAGTCTAACCCTTTCTTCATACAAAAGTTCGGATTTTG
TGAGACATGACGTGAAAAA Coding sequence (CDS) from alignment at sc0002375:21460..22378 >TCONS_00040280 ID=TCONS_00040280|Name=TCONS_00040280|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0002375:21460..22378 (Clytia hemisphaerica)
ctAAGATACTTCAAACCGCTCCCATGCTGACGGATTTTCTAATAAGTTTT
TAAAAAGAGTGTTGAATTGCTCTTGGTCACTGAAAGAGCGACTGAGTAGA
AGAGTGAACCCACAGGTACTTGCTCGTGGCAACATCATCTGTGGATTGTC
TTGACCATTAAAAGTAACATTTATTTTCTCCTGCATCATCTCCATACCAG
TCACAAACTTCATAAAAATTGACGCCTCGGATTGTGAGAGCTCCTCGATA
AAGTTTTGAAGGAAAACAAAACAACGCTGCTCAGCTTCTTTAAAGATTTG
ACTTTCTGAATCAAAGGTTGGCTTCAAGTTTTCAACAATATCGCTTCCAT
TTGGTCTCATTGCTTTAGCGTAGCCTTGAAGACATTCCTCTGTCAACATA
TCGAAATCTTTGGAGATCACCTCAGCTCCATCTCTCATCAAGGCACACGC
ATGAAACGGCTTTACCACAAGTATGAAGTGTGCCAATGTTTGAATAACCG
ATTTCAATGAATCGACACTCAAGAGTGACTGACACTCATAACTTGCTAGG
GTATTTGTCAGTCTAACCCTTTCTTCATACAAAAGTTCGGATTTTGTGAG
ACATGACGTGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040280-exon-sc0002375-1491911889:21460..22378 | TCONS_00040280-exon-sc0002375-1491911889:21460..22378 | Clytia hemisphaerica | exon |
| TCONS_00040280-exon-sc0002375-1510915933:21460..22378 | TCONS_00040280-exon-sc0002375-1510915933:21460..22378 | Clytia hemisphaerica | exon |
| TCONS_00040280-exon-sc0002375-1575043694:21460..22378 | TCONS_00040280-exon-sc0002375-1575043694:21460..22378 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002375 | supercontig | sc0002375:21460..22378 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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