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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040277 ID=TCONS_00040277|Name=TCONS_00040277|organism=Clytia hemisphaerica|type=transcript|length=1263bp
tcgaaaattattttttaaattacacAAAGAGTTTTTTATGTAGGTCTACC
AAAATTTGCACAGTTAAAATTTGGGCATATTTAAAACTTCGTGCAAAAAA
CTGGGCTTAAAGGATCAAAATTGAGAGAACTGcaagtattttaagaaata
gtACAATTTTTCTATTGcaggaaaatgatgaaaaattgacgtcaaaaatg
aaaatagatCTGATAAATTTACCCAATAGTTTTGTAACTTCTCTGATGGA
TACTTACTTGTACTTGCTGGTTTAGCTAAATCGTCCGTTTGACAACTGTT
GGCGGTTCGTTTGGGATGAACCATGTCCCTTTCGTTTTAGTGCTTCTTTG
TAGAAATTGTCTTTTGTCAACCcagaaaatttcatcactttgtCTTCTAG
TGTCTCAGTTGGTCGACCAATTTTCGTACGTTTGTTTNTCAACTGTTGGA
GGTTCGTTTGGGATGAACCATGTCCCTTTCGTTTTAGTGCTTTGTAGAAA
TTGTCTTTTGTCAACCcagaaaatttcatcactttgtCTTCTAGTGTCTC
AGTTGGTCGACCAATTTTCGTACGTTTGTTTACGTTGAACAAGAGTCTTT
TTGTTAAACATTGGTTTGGTTGTCGTGCCAAGTGTGCGAGATAACTTGAT
GGTTGTTTTGATACGAAAGTTGCGATATCCTCGGTTCGACAAATTCTTAG
AATGTCTTGGTTTGTCATAAAAAACCGATGTCCTTCAGTCTTGGAGCCAT
TTCGTACAAGTTTCCTAAGCATACCAACATATACAGAATTTATTCTATTC
ATTTCTGCAGTACTCACATTCCAAGTCTGGCAAGAATAAGTCAGTTTAGT
GCGAACCATTAAATTGAAAATCAGTACTCTTGTTTTCAAATGAATTTTAT
AGTTCGTTAATTTAGTAATCAGGTCGTAAAATTTAGCTTCAGCTAGTGAT
ATGCGAAGGCTTATTTCTGCGCTGCCCGTCGATGGTTCGTCATATTTTAT
CTCGTCTCCGATGTATCAAAatgttttaacgttttcgatCGCCAGATTCT
GTAGTTCAGCAATAGATTCAGGGTACGTCGACTGGTAATGTTCTTTGATG
TATTCAAAGTTGAAGATGatactttttgttttcttgatgtTAATACTCAG
TCCGTATTTTGAGAATATCTCATGTAAAAGAACAAGGCCCTTTTGAAGAT
CGATTACACTTTCGAAAAAGAGTTCTAAATCGTCCGCATAACCCGACCAG
TCATGATCTCCTT Run BLAST on NCBI protein sequence of TCONS_00040277-protein >TCONS_00040277-protein ID=TCONS_00040277-protein|Name=TCONS_00040277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MVRTKLTYSCQTWNVSTAEMNRINSVYVGMLRKLVRNGSKTEGHRFFMTN
QDILRICRTEDIATFVSKQPSSYLAHLARQPNQCLTKRLLFNVNKRTKIG
RPTETLEDKVMKFSGLTKDNFYKALKRKGHGSSQTNLQQLXNKRTKIGRP
TETLEDKVMKFSGLTKDNFYKEALKRKGHGSSQTNRQQLSNGRFS Run BLAST on NCBI transcript from alignment at sc0002375:107..1369 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040277 ID=TCONS_00040277|Name=TCONS_00040277|organism=Clytia hemisphaerica|type=transcript|length=1263bp|location=Sequence derived from alignment at sc0002375:107..1369 (Clytia hemisphaerica)
AAGGAGATCATGACTGGTCGGGTTATGCGGACGATTTAGAACTCTTTTTC
GAAAGTGTAATCGATCTTCAAAAGGGCCTTGTTCTTTTACATGAGATATT
CTCAAAATACGGACTGAGTATTAacatcaagaaaacaaaaagtatCATCT
TCAACTTTGAATACATCAAAGAACATTACCAGTCGACGTACCCTGAATCT
ATTGCTGAACTACAGAATCTGGCGatcgaaaacgttaaaacatTTTGATA
CATCGGAGACGAGATAAAATATGACGAACCATCGACGGGCAGCGCAGAAA
TAAGCCTTCGCATATCACTAGCTGAAGCTAAATTTTACGACCTGATTACT
AAATTAACGAACTATAAAATTCATTTGAAAACAAGAGTACTGATTTTCAA
TTTAATGGTTCGCACTAAACTGACTTATTCTTGCCAGACTTGGAATGTGA
GTACTGCAGAAATGAATAGAATAAATTCTGTATATGTTGGTATGCTTAGG
AAACTTGTACGAAATGGCTCCAAGACTGAAGGACATCGGTTTTTTATGAC
AAACCAAGACATTCTAAGAATTTGTCGAACCGAGGATATCGCAACTTTCG
TATCAAAACAACCATCAAGTTATCTCGCACACTTGGCACGACAACCAAAC
CAATGTTTAACAAAAAGACTCTTGTTCAACGTAAACAAACGTACGAAAAT
TGGTCGACCAACTGAGACACTAGAAGacaaagtgatgaaattttctgGGT
TGACAAAAGACAATTTCTACAAAGCACTAAAACGAAAGGGACATGGTTCA
TCCCAAACGAACCTCCAACAGTTGANAAACAAACGTACGAAAATTGGTCG
ACCAACTGAGACACTAGAAGacaaagtgatgaaattttctgGGTTGACAA
AAGACAATTTCTACAAAGAAGCACTAAAACGAAAGGGACATGGTTCATCC
CAAACGAACCGCCAACAGTTGTCAAACGGACGATTTAGCTAAACCAGCAA
GTACAAGTAAGTATCCATCAGAGAAGTTACAAAACTATTGGGTAAATTTA
TCAGatctattttcatttttgacgtcaatttttcatcattttcctgCAAT
AGAAAAATTGTactatttcttaaaatacttgCAGTTCTCTCAATTTTGAT
CCTTTAAGCCCAGTTTTTTGCACGAAGTTTTAAATATGCCCAAATTTTAA
CTGTGCAAATTTTGGTAGACCTACATAAAAAACTCTTTgtgtaatttaaa
aaataattttcga Coding sequence (CDS) from alignment at sc0002375:107..1369 >TCONS_00040277 ID=TCONS_00040277|Name=TCONS_00040277|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0002375:107..1369 (Clytia hemisphaerica)
ATGGTTCGCACTAAACTGACTTATTCTTGCCAGACTTGGAATGTGAGTAC
TGCAGAAATGAATAGAATAAATTCTGTATATGTTGGTATGCTTAGGAAAC
TTGTACGAAATGGCTCCAAGACTGAAGGACATCGGTTTTTTATGACAAAC
CAAGACATTCTAAGAATTTGTCGAACCGAGGATATCGCAACTTTCGTATC
AAAACAACCATCAAGTTATCTCGCACACTTGGCACGACAACCAAACCAAT
GTTTAACAAAAAGACTCTTGTTCAACGTAAACAAACGTACGAAAATTGGT
CGACCAACTGAGACACTAGAAGacaaagtgatgaaattttctgGGTTGAC
AAAAGACAATTTCTACAAAGCACTAAAACGAAAGGGACATGGTTCATCCC
AAACGAACCTCCAACAGTTGANAAACAAACGTACGAAAATTGGTCGACCA
ACTGAGACACTAGAAGacaaagtgatgaaattttctgGGTTGACAAAAGA
CAATTTCTACAAAGAAGCACTAAAACGAAAGGGACATGGTTCATCCCAAA
CGAACCGCCAACAGTTGTCAAACGGACGATTTAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040277-exon-sc0002375-1491911889:107..1369 | TCONS_00040277-exon-sc0002375-1491911889:107..1369 | Clytia hemisphaerica | exon |
| TCONS_00040277-exon-sc0002375-1510915933:107..1369 | TCONS_00040277-exon-sc0002375-1510915933:107..1369 | Clytia hemisphaerica | exon |
| TCONS_00040277-exon-sc0002375-1575043694:107..1369 | TCONS_00040277-exon-sc0002375-1575043694:107..1369 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002375 | supercontig | sc0002375:107..1369 . |
Blast
The following BLAST results are available for this feature:
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