TCONS_00040272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040272
Unique NameTCONS_00040272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040272 ID=TCONS_00040272|Name=TCONS_00040272|organism=Clytia hemisphaerica|type=transcript|length=592bp
TGAAGCTGCCAAAATTGGAAGGGAGAAAGCAagACTATCAAAACCTACTT
CAATTCGTCGAAGTCATACATGGCAAGAAAATCTGATAAGTTTTTGCGCG
AAGCTGCCAAAATTGGAAGGAAGAAAACAAAACATAAAAACCGAAAAAAC
GCCCTGGAAAATTCGACAACAATACCTCAAGTAGATAAACTGCTCTTACA
TTGGACTTCATGTCATCAGAAGATGAGCGTGATGAGGATGACTTggaaca
ttttgaaattcgcCCCTTGAGATGGCGAACGCAGAAGTGCGACAAATACT
TTAAATCTTTGGATAAGCGACACAGAAAGAAACAATCAAAAAGGTCTCGT
CAACTAACTGTCGTACGGAAAATGGGGCCGTACAGTAGCAGAAAATCACC
AGAACTGAACGACTCTAACTCGTGGGCAATTAAAAATAACTAAGACTTTT
TATTCTTCTGaccatttgaaagctctttaTAAATGATAAAGAAGACATTC
AAGTGTCGATTTCTTTACTGATATTTAGTTATTAGAGCTAGCAGCCATTT
CGACCTTCCTGATCAAAAAGTACGCAAAAAGCTCATATTTTG
Run BLAST on NCBI

transcript from alignment at sc0002372:7630..8702-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040272 ID=TCONS_00040272|Name=TCONS_00040272|organism=Clytia hemisphaerica|type=transcript|length=1073bp|location=Sequence derived from alignment at sc0002372:7630..8702- (Clytia hemisphaerica)
TGAAGCTGCCAAAATTGGAAGGGAGAAAGCAGTAAGAATATTTGTCTCCT
GTTTTGATATTCTTTTTGTATTACAAAATCACGAGTGATAAACTGTCTTT
TCAAAGCAGCATATTTTACTTTAATTATAGTTATTAGATTAGATAATTGT
TGATTTCTGGTCACTTCTCTTTTTAAAAAATATTAAAATCTTTGTTCTTA
CATTGTATTTACACAAAGGTTTGCTTTGTTTTCATTTTAGAGACTATCAA
AACCTACTTCAATTCGTCGAAGTCATACATGGCAAGAAAATCTGATAAGT
TTTTGCGCGAAGCTGCCAAAATTGGAAGGAAGAAAACAGTAAGAATATTT
GTCTCCTGTTTTGATCACAAATCAAATAATTTTTTTTAAAGCAGGTGGGG
TCAAGAGTAATTAGCAAAAGTAGTTTTTAAAAACTTGAACTTACATGCAA
GACTAATAATAAAAAGATATAGTCACAAATATAACATGGTTTGTGGGACT
GTTTTGAAAGAGTTAATCATTCTGTTGCTGTCCAGAGCAATATTTTAGTT
TAAGAAATGATTTGACTGAATGGAAATCAGGAAACCTAATAATTCATTTC
CTTTCGCTAGAAACATAAAAACCGAAAAAACGCCCTGGAAAATTCGACAA
CAATACCTCAAGTAGATAAACTGCTCTTACATTGGACTTCATGTCATCAG
AAGATGAGCGTGATGAGGATGACTTGGAACATTTTGAAATTCGCCCCTTG
AGATGGCGAACGCAGAAGTGCGACAAATACTTTAAATCTTTGGATAAGCG
ACACAGAAAGAAACAATCAAAAAGGTCTCGTCAACTAACTGTCGTACGGA
AAATGGGGCCGTACAGTAGCAGAAAATCACCAGAACTGAACGACTCTAAC
TCGTGGGCAATTAAAAATAACTAAGACTTTTTATTCTTCTGACCATTTGA
AAGCTCTTTATAAATGATAAAGAAGACATTCAAGTGTCGATTTCTTTACT
GATATTTAGTTATTAGAGCTAGCAGCCATTTCGACCTTCCTGATCAAAAA
GTACGCAAAAAGCTCATATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024443XLOC_024443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040272-exon-sc0002372-1575043694:8672..8702TCONS_00040272-exon-sc0002372-1575043694:8672..8702Clytia hemisphaericaexon
TCONS_00040272-exon-sc0002372-1575043694:8365..8462TCONS_00040272-exon-sc0002372-1575043694:8365..8462Clytia hemisphaericaexon
TCONS_00040272-exon-sc0002372-1575043694:7630..8092TCONS_00040272-exon-sc0002372-1575043694:7630..8092Clytia hemisphaericaexon
TCONS_00040272-exon-sc0002372-1510915933:8672..8702TCONS_00040272-exon-sc0002372-1510915933:8672..8702Clytia hemisphaericaexon
TCONS_00040272-exon-sc0002372-1510915933:8365..8462TCONS_00040272-exon-sc0002372-1510915933:8365..8462Clytia hemisphaericaexon
TCONS_00040272-exon-sc0002372-1510915933:7630..8092TCONS_00040272-exon-sc0002372-1510915933:7630..8092Clytia hemisphaericaexon
TCONS_00040272-exon-sc0002372-1491911889:8672..8702TCONS_00040272-exon-sc0002372-1491911889:8672..8702Clytia hemisphaericaexon
TCONS_00040272-exon-sc0002372-1491911889:8365..8462TCONS_00040272-exon-sc0002372-1491911889:8365..8462Clytia hemisphaericaexon
TCONS_00040272-exon-sc0002372-1491911889:7630..8092TCONS_00040272-exon-sc0002372-1491911889:7630..8092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002372supercontigsc0002372:7630..8702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.184917	0.180323	0.0598765	0.10261	2.15671	1.09688	0.98562	0.9065	0.378642	2.94305	2.31888	0.704852	0.043676	0.237294	2.23075	2.5797	0	1.11911	0.50594	0.926982	0.46017	0	0.0451785	0.496128	0	0.0887603	1.43272	0.870989	1.30703	0.762959
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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