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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040263 ID=TCONS_00040263|Name=TCONS_00040263|organism=Clytia hemisphaerica|type=transcript|length=998bp
CTGCGGCGTCACGCTTTGATCAACCAAAGACGCATCAATCTTCAACCAGA
AAACAAGCCATGCAGGAGCCACCTGCGGCGTCACACCTTGATCAATCGCC
GACACACCTTGATCAATCGTCGACAGACCTTGATCAATCGTCGACACACC
TACCTTCAATCGGCAGACAAGTCTTGCAGGAGCCACCTGCGGCGTCACGC
TTTGAACAACCAAAGACGCATCAATCTTCAACCAGCAAACAAGCCATGCA
GGAGCCACCTGCGGCGTCACACCTTGATCAATCGTCGACACTCCTACCGT
CAATCAGCAGACAAGTCATGCAGGAGCCACCTGCGGCGTCACGCTTTGAT
CAACCAAAGACGCATCAATCTTCAACCAGTAGACAAGCTATGCAGAAGCC
ACCTGCGGCATCAATCAATTTTGATCCATCAAGGAGACACATATCGTCAA
TCAAACAAGCCTTGCCGGAGCCACCTGAGGCGACATTCAACATTGATCAG
TCAAGGATGTACCAATCACCCGTCAATACCCAAGCCATGCAGGAGCCACC
TGCGGCATCTCAATGTTCCAAACAGACAAAGTTGTACCCATCGACTTACA
TGCATCAAGCCAAGCAAAATCCAACTGCGATATCACATCCACGCCCTTCC
ATGACATCAATTAACACAGAACCGTTTCAACATTCAAGCTTACCAGTTCA
GGCTTCATCGATGGATGATATCATGGAGACTTATTCACCACTTACGTCAC
CGAAAAGGACATCTCCTGAACCGCTGTCGACAAACGATCTGCTATTTGCC
ATGCTAAAACAACAAGAGGCACCACGTGTGGACGTGGAATCGTACGATGG
AGATCCACTCAACTATGCACATTTCATCTCTGTTTTCAAAGAAGCAGTTG
AATCGAAAATCCCAAATCCTAGAGGAAGGCTGACAAGACTGATGAAGTAC
ACCACAGCTGAAGCTCATGAAGCAATCAAACATTGCATCCAACTACCG Run BLAST on NCBI protein sequence of TCONS_00040263-protein >TCONS_00040263-protein ID=TCONS_00040263-protein|Name=TCONS_00040263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
AASRFDQPKTHQSSTRKQAMQEPPAASHLDQSPTHLDQSSTDLDQSSTHL
PSIGRQVLQEPPAASRFEQPKTHQSSTSKQAMQEPPAASHLDQSSTLLPS
ISRQVMQEPPAASRFDQPKTHQSSTSRQAMQKPPAASINFDPSRRHISSI
KQALPEPPEATFNIDQSRMYQSPVNTQAMQEPPAASQCSKQTKLYPSTYM
HQAKQNPTAISHPRPSMTSINTEPFQHSSLPVQASSMDDIMETYSPLTSP
KRTSPEPLSTNDLLFAMLKQQEAPRVDVESYDGDPLNYAHFISVFKEAVE
SKIPNPRGRLTRLMKYTTAEAHEAIKHCIQLP Run BLAST on NCBI transcript from alignment at sc0002369:12727..13724 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040263 ID=TCONS_00040263|Name=TCONS_00040263|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at sc0002369:12727..13724 (Clytia hemisphaerica)
CGGTAGTTGGATGCAATGTTTGATTGCTTCATGAGCTTCAGCTGTGGTGT
ACTTCATCAGTCTTGTCAGCCTTCCTCTAGGATTTGGGATTTTCGATTCA
ACTGCTTCTTTGAAAACAGAGATGAAATGTGCATAGTTGAGTGGATCTCC
ATCGTACGATTCCACGTCCACACGTGGTGCCTCTTGTTGTTTTAGCATGG
CAAATAGCAGATCGTTTGTCGACAGCGGTTCAGGAGATGTCCTTTTCGGT
GACGTAAGTGGTGAATAAGTCTCCATGATATCATCCATCGATGAAGCCTG
AACTGGTAAGCTTGAATGTTGAAACGGTTCTGTGTTAATTGATGTCATGG
AAGGGCGTGGATGTGATATCGCAGTTGGATTTTGCTTGGCTTGATGCATG
TAAGTCGATGGGTACAACTTTGTCTGTTTGGAACATTGAGATGCCGCAGG
TGGCTCCTGCATGGCTTGGGTATTGACGGGTGATTGGTACATCCTTGACT
GATCAATGTTGAATGTCGCCTCAGGTGGCTCCGGCAAGGCTTGTTTGATT
GACGATATGTGTCTCCTTGATGGATCAAAATTGATTGATGCCGCAGGTGG
CTTCTGCATAGCTTGTCTACTGGTTGAAGATTGATGCGTCTTTGGTTGAT
CAAAGCGTGACGCCGCAGGTGGCTCCTGCATGACTTGTCTGCTGATTGAC
GGTAGGAGTGTCGACGATTGATCAAGGTGTGACGCCGCAGGTGGCTCCTG
CATGGCTTGTTTGCTGGTTGAAGATTGATGCGTCTTTGGTTGTTCAAAGC
GTGACGCCGCAGGTGGCTCCTGCAAGACTTGTCTGCCGATTGAAGGTAGG
TGTGTCGACGATTGATCAAGGTCTGTCGACGATTGATCAAGGTGTGTCGG
CGATTGATCAAGGTGTGACGCCGCAGGTGGCTCCTGCATGGCTTGTTTTC
TGGTTGAAGATTGATGCGTCTTTGGTTGATCAAAGCGTGACGCCGCAG Coding sequence (CDS) from alignment at sc0002369:12727..13724 >TCONS_00040263 ID=TCONS_00040263|Name=TCONS_00040263|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0002369:12727..13724 (Clytia hemisphaerica)
CGGTAGTTGGATGCAATGTTTGATTGCTTCATGAGCTTCAGCTGTGGTGT
ACTTCATCAGTCTTGTCAGCCTTCCTCTAGGATTTGGGATTTTCGATTCA
ACTGCTTCTTTGAAAACAGAGATGAAATGTGCATAGTTGAGTGGATCTCC
ATCGTACGATTCCACGTCCACACGTGGTGCCTCTTGTTGTTTTAGCATGG
CAAATAGCAGATCGTTTGTCGACAGCGGTTCAGGAGATGTCCTTTTCGGT
GACGTAAGTGGTGAATAAGTCTCCATGATATCATCCATCGATGAAGCCTG
AACTGGTAAGCTTGAATGTTGAAACGGTTCTGTGTTAATTGATGTCATGG
AAGGGCGTGGATGTGATATCGCAGTTGGATTTTGCTTGGCTTGATGCATG
TAAGTCGATGGGTACAACTTTGTCTGTTTGGAACATTGAGATGCCGCAGG
TGGCTCCTGCATGGCTTGGGTATTGACGGGTGATTGGTACATCCTTGACT
GATCAATGTTGAATGTCGCCTCAGGTGGCTCCGGCAAGGCTTGTTTGATT
GACGATATGTGTCTCCTTGATGGATCAAAATTGATTGATGCCGCAGGTGG
CTTCTGCATAGCTTGTCTACTGGTTGAAGATTGATGCGTCTTTGGTTGAT
CAAAGCGTGACGCCGCAGGTGGCTCCTGCATGACTTGTCTGCTGATTGAC
GGTAGGAGTGTCGACGATTGATCAAGGTGTGACGCCGCAGGTGGCTCCTG
CATGGCTTGTTTGCTGGTTGAAGATTGATGCGTCTTTGGTTGTTCAAAGC
GTGACGCCGCAGGTGGCTCCTGCAAGACTTGTCTGCCGATTGAAGGTAGG
TGTGTCGACGATTGATCAAGGTCTGTCGACGATTGATCAAGGTGTGTCGG
CGATTGATCAAGGTGTGACGCCGCAGGTGGCTCCTGCATGGCTTGTTTTC
TGGTTGAAGATTGATGCGTCTTTGGTTGATCAAAGCGTGACGCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040263-exon-sc0002369-1491911889:12727..13724 | TCONS_00040263-exon-sc0002369-1491911889:12727..13724 | Clytia hemisphaerica | exon |
| TCONS_00040263-exon-sc0002369-1510915933:12727..13724 | TCONS_00040263-exon-sc0002369-1510915933:12727..13724 | Clytia hemisphaerica | exon |
| TCONS_00040263-exon-sc0002369-1575043694:12727..13724 | TCONS_00040263-exon-sc0002369-1575043694:12727..13724 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002369 | supercontig | sc0002369:12727..13724 . |
Blast
The following BLAST results are available for this feature:
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