TCONS_00040261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040261
Unique NameTCONS_00040261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040261 ID=TCONS_00040261|Name=TCONS_00040261|organism=Clytia hemisphaerica|type=transcript|length=304bp
ATGAAGTAACTATTGCATCCAGTATACTCATTCAGCTAACCGGATATGTC
AAGAATGTTTCTCTTTCAAATAAACTTTCTCCCCTTTAAAATTGACCTCC
TCTTTTTGTACAAGCCGCCCCTTCTTTTGAATTCAGTAAAACTTTCAAAC
CCATTATTGTCAAGGGGGTGTGACcactgtatttttattttatacccCCC
CCTAAAAAACTTATGATTTATTACCATTTTGCCTTGAAACGCAAAAAACA
ACTCAAGTTACCCAGAGTCGTGGTTTTACAAGTTAGGTTAACTGACTATG
GGCT
Run BLAST on NCBI

transcript from alignment at sc0002368:2299..2602

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040261 ID=TCONS_00040261|Name=TCONS_00040261|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0002368:2299..2602 (Clytia hemisphaerica)
AGCCCATAGTCAGTTAACCTAACTTGTAAAACCACGACTCTGGGTAACTT
GAGTTGTTTTTTGCGTTTCAAGGCAAAATGGTAATAAATCATAAGTTTTT
TAGGGGGgggtataaaataaaaatacagtgGTCACACCCCCTTGACAATA
ATGGGTTTGAAAGTTTTACTGAATTCAAAAGAAGGGGCGGCTTGTACAAA
AAGAGGAGGTCAATTTTAAAGGGGAGAAAGTTTATTTGAAAGAGAAACAT
TCTTGACATATCCGGTTAGCTGAATGAGTATACTGGATGCAATAGTTACT
TCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024436XLOC_024436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040261-exon-sc0002368-1491911889:2299..2602TCONS_00040261-exon-sc0002368-1491911889:2299..2602Clytia hemisphaericaexon
TCONS_00040261-exon-sc0002368-1510915933:2299..2602TCONS_00040261-exon-sc0002368-1510915933:2299..2602Clytia hemisphaericaexon
TCONS_00040261-exon-sc0002368-1575043694:2299..2602TCONS_00040261-exon-sc0002368-1575043694:2299..2602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002368supercontigsc0002368:2299..2602 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.85489	3.19685	0	1.89804	1.77067	0.761829	0.499828	0	0	0	1.23713	0.108275	1.329	0	0.741129	0.616456	0.838768	1.89433	0.131204	0.851799	0	0	1.14299	0	1.04308	0.824694
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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