TCONS_00040255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040255
Unique NameTCONS_00040255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040255 ID=TCONS_00040255|Name=TCONS_00040255|organism=Clytia hemisphaerica|type=transcript|length=485bp
CAACGGATTTCAACACTTGTAAAGCCTCGGCTATAGGTTTGGTAGTGAAA
GCAGGTTCCGCACGGAGCAATATGTTTCCCAACTGTTCAGTTGTACATTC
TAATAACTGCCCTGCGGCGATATCATCCCGAATTCCAGATCCTGTACGGT
AAGTCTCCCAACGACGTTGAAAAGCGTTCCAGTCTTCATTGGTGCAGTTG
AGCTGTAGCTTTGGACGGTCAAGTTTTGGGCCTCTTACGGGAGGAGCTGC
TGGTTGCGGTACTACCATGTGTGTGTATGTGTGAGCGTTCAAGATTGCTG
CAGCCCCAACTACATCGACATCATCAGTGGCGAACCCACAACCAGGGATT
GGGCAATTCAAAACAGTCATAATGCAGTGATAAGGATCAATACATGGATA
AAAGTATCATTCAGCTAATTTCTATTTAGTATAACGAATGTATTGATCTA
AACGATAAGATAAATATATGTACAGTAACATAACT
Run BLAST on NCBI

protein sequence of TCONS_00040255-protein

>TCONS_00040255-protein ID=TCONS_00040255-protein|Name=TCONS_00040255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MTVLNCPIPGCGFATDDVDVVGAAAILNAHTYTHMVVPQPAAPPVRGPKL
DRPKLQLNCTNEDWNAFQRRWETYRTGSGIRDDIAAGQLLECTTEQLGNI
LLRAEPAFTTKPIAEALQVLKSV
Run BLAST on NCBI

transcript from alignment at sc0002366:5483..5967

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040255 ID=TCONS_00040255|Name=TCONS_00040255|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0002366:5483..5967 (Clytia hemisphaerica)
AGTTATGTTACTGTACATATATTTATCTTATCGTTTAGATCAATACATTC
GTTATACTAAATAGAAATTAGCTGAATGATACTTTTATCCATGTATTGAT
CCTTATCACTGCATTATGACTGTTTTGAATTGCCCAATCCCTGGTTGTGG
GTTCGCCACTGATGATGTCGATGTAGTTGGGGCTGCAGCAATCTTGAACG
CTCACACATACACACACATGGTAGTACCGCAACCAGCAGCTCCTCCCGTA
AGAGGCCCAAAACTTGACCGTCCAAAGCTACAGCTCAACTGCACCAATGA
AGACTGGAACGCTTTTCAACGTCGTTGGGAGACTTACCGTACAGGATCTG
GAATTCGGGATGATATCGCCGCAGGGCAGTTATTAGAATGTACAACTGAA
CAGTTGGGAAACATATTGCTCCGTGCGGAACCTGCTTTCACTACCAAACC
TATAGCCGAGGCTTTACAAGTGTTGAAATCCGTTG

Coding sequence (CDS) from alignment at sc0002366:5483..5967

>TCONS_00040255 ID=TCONS_00040255|Name=TCONS_00040255|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0002366:5483..5967 (Clytia hemisphaerica)
ATGACTGTTTTGAATTGCCCAATCCCTGGTTGTGGGTTCGCCACTGATGA
TGTCGATGTAGTTGGGGCTGCAGCAATCTTGAACGCTCACACATACACAC
ACATGGTAGTACCGCAACCAGCAGCTCCTCCCGTAAGAGGCCCAAAACTT
GACCGTCCAAAGCTACAGCTCAACTGCACCAATGAAGACTGGAACGCTTT
TCAACGTCGTTGGGAGACTTACCGTACAGGATCTGGAATTCGGGATGATA
TCGCCGCAGGGCAGTTATTAGAATGTACAACTGAACAGTTGGGAAACATA
TTGCTCCGTGCGGAACCTGCTTTCACTACCAAACCTATAGCCGAGGCTTT
ACAAGTGTTGAAATCCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024430XLOC_024430Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040255-proteinTCONS_00040255-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040255-exon-sc0002366-1491911889:5483..5967TCONS_00040255-exon-sc0002366-1491911889:5483..5967Clytia hemisphaericaexon
TCONS_00040255-exon-sc0002366-1510915933:5483..5967TCONS_00040255-exon-sc0002366-1510915933:5483..5967Clytia hemisphaericaexon
TCONS_00040255-exon-sc0002366-1575043694:5483..5967TCONS_00040255-exon-sc0002366-1575043694:5483..5967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002366supercontigsc0002366:5483..5967 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.289866	0.298285	0.38331	0.162734	0.346694	0.433069	0.188872	0.265241	0	0.449014	1.17208	1.45535	0.460427	0.819738	0.469227	0.432738	0.609522	0.581533	0.334184	0.571951	1.24282	0.363723	0.252672	1.08111	0.13801	0.619738	0.881287	0	0.285344	0.436081
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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