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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040253 ID=TCONS_00040253|Name=TCONS_00040253|organism=Clytia hemisphaerica|type=transcript|length=543bp
AGTGAGTGCCGTAGCCAGTTCGAAACCGATACATAAAGAGATCTGGTTCA
TTCTCACATTGAGCATCATTCTCACATTCATCACTTTGATTATCATCGTC
ATGATCATCTGGGTCCGTCGGAGGTGCCATCACCGTAAGGAGCCAACTGG
TGGTGCCAGTATGCTTAAAAGTGAAGACAACGAACCAAAGATGAACAAGG
AAGATAAACAACACGAACTCGTGCAAGACGACCCCCGAACAGCCTACCCG
ATGGGAGCACCGCCCGCTTACTCAGAAAAGTAATGACAATTATACGTATT
ACGTCATTGCatatttaaagtctattcacgataagtgtgcactctttttt
catttacctataactttgaaggaattcttcaatttttataaatttggtat
cattggaaaacgctgttttctgctgttttctgattttttttagggtcaat
cacttattaattttgtatcataactttatactaaataaatattttagtaa
aatttcttcacaTTGATGAtttcctaagatcaaagaatctctc Run BLAST on NCBI transcript from alignment at sc0002366:9174..16527- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040253 ID=TCONS_00040253|Name=TCONS_00040253|organism=Clytia hemisphaerica|type=transcript|length=7354bp|location=Sequence derived from alignment at sc0002366:9174..16527- (Clytia hemisphaerica)
AGTGAGTGCCGTAGCCAGTTCGAAACCGATACATAAAGAGATCTGGTTCA
TTCTCACATTGAGCATCATTCTCACATTCATCACTTTGATTATCATCGTC
ATGATCATCTGGGTCCGTCGGAGGTGCCATCACCGTAAGGAGCCAACTGG
TGGTGCCAGTATGCTTAAAAGTGAAGACAACGGTAAATACCTCGCTCCCA
GTGCTAATCTCCGGATGTATTCTTTATAGCGTTTGCACAAAGAGAATATA
AAAACAAATGTTAGAGAGAGAACAAAATCTTTCTCTATTTTTCGATGTGT
GGTGCCATAATAATAGAAATTGATTTGCGCTCTATTATGAACGGACCAAT
GGGAGTGCGATATTTTCTCTTTTTTTGATTGACGTTTACGAGAGAAAAAC
AACGAAAAAAGATTAGCTTTGTTCGGACTCGGACTGAACTCAATAATAAC
AGAAACTAGATGCGCAGCGTCGCACGCTGCGTGTCCCAATCCAGTGAATC
ACTACACATCTAAAAAATTCTAACAGAAGAAAGATAGCCGCCAATCGATG
ATTTGATTTTAATTTTAGGAAATTAAGGAGAAAAAAGATAACATTACATT
GCCAAAAATTTGGGAAGAAGGTTGACTTTAACCCATCAAGCTCCAAATTT
GGTGAATAGAAAATAGTATCTTGGGGTCTCAAAGTTAGTCTAGTGGTAGG
AAATCTGCTTAAGGTGCAAAAATATGATGGTTCAACGCCATGAAGAGGAG
GCTTTGTAGAGCTTTGTTAGATTTTCGAGACGTTGACGTTGTAAACACAC
ACGTTTAAGCGTATTAAAATATATAGATTCTTTTTTTTCTAAAATTATTT
ATAAAAATATCTCTCAAGCTGAATTGTAGCTGTATATTTCAAACATGAAA
TTACATGCCTATTTTCTTCAAAACTTTCTTATATCTAAAAAACTAATAGT
AAAATAAAGAAGGAGAGGGGTAATTTTTATCTGAGTTCTAGCTAAATAAC
TTTCCTTCTGAAATATTAGGGAGCGGTCATCTTATTGGATATATGTACAT
TTCATATTGCAATTATTTGAGCATCATCGCCTTGCCCTTTTGGTTTGTAA
CATTGAGCTAGGCGAGGGAAGTAGATTAGTGGCTCTCACAGCTCATCAGA
GTGGTTTGAAAAAGTACTTCTTAAAAGAAATTTGTCAAAACAAAGTGTCT
TTTAGCTAAAATGGTGGAGAAAAATATTGAAATTTTCGCCCGTCGGCGCA
AACCATGGTTGCGCCTCCTTAGCATCTGCTAATGTCTTCTAACTTACATA
CTAACTAAAAGACACAGGGCTTTGACAGACCCTGGAAAACCTGGAAAATA
TAGGTTTTATAGGAAAATTTCAAACTGAGAGAATTTGATTTTTCAGATTC
CTTTTAACAACAGAACAGCTTGTATTTCAGGGTCTCGAGTAACCAATCTT
CAAAATTTTCTCTTGAGTAATTGAGATGCCTCTGTAATATCTGATGAAAA
ATGGTATTCGACATCTCACCATCAGTTTCAAAATAGACTCAGGCAGATTG
TGTACATTATCAGTAATTTTTCAGGGAATCAGTGGCGACCTGGCAGGGGG
TGCACCCCCAGAAAGATCTGAGAGGGGCGCCAAAAGAGCTTTTCAAGGGG
GCGCCAAAATTTGGTTGATGTTTAATTGGGCAATTTGGGACCCTTCTTCA
CGTTTATAGCGCCTTTTATAAAGTGTTATGTTAATTTTTTTTCGCGTGCG
GTGCTTTTTCTTTGCGCTCTTGCATCTTTTCTCTTGAGTTTTTCCGAAAC
GACCATCAACATTGAATTGCGAAAGGCTGAAGCAAGGTGTTGTGTATCAA
CCAGTAGTTCAAGAGGATGCTCACCCCCAGAGAGAATACCAAAAAGATCG
AAACTTGTTGATGCTCGCTGTGGTTTTTGTGGTCTTATGCCTGCTTATGC
TGACCAAATTTCTCCTTTTTAGTAACTCTTTTAAATTGTTTGACCTTTCT
CACCAAAAATTTCCATGCCCCTTATCCCTAGCCTCTTTTAGCCATTGATC
TTTAATGGAGAGTAAAGTAGTGGCGCAAAAGCTTAAATAAGATGATCAAA
TTACCTAATAATCTGATTAGATTATCAGGTACAAAACTTCAATTTCAAGC
ATCAACAGCTCATGTATTTTATTTGAGTGGCTTTATTTTTGGTGCTATAA
TATGGGGCATTTTAGACAGATTAAAAGTTGAAAATTGAAAAACTTTCCGC
CGGCGCAAACCATGGTTGCGCCTCCTTTGTTCAAACACCTTAACATTTCA
AATTACAAAAAACAAATTCCAAGTTTCTTGACTCTAAGATTCCGGGCATT
ACTTTCAACCATACTGCTCTTATAGTTTAATATTTTCACTTAATAATGGA
GGGCGCCAATTTCATAGACTAGTAAACTAGTCTTTGAAAACAGACCCATA
TACAAAAAATCAAGCTCCAAATAAAAAGAATCGAAGGGGTGAAGTTGCGT
CTCTTTTCTGAATTTCAACGACTAGAAGCTACTTCCCTCAAAAAACGTTG
TTTAATTTTACAACTTTTTTTAGGTTTTTGAGAATTTTTTGACTAAATGA
TATTTCATAGTAACATTGAACATGGGAACATATAAATAAATGAGCATTTC
TAAAAACGCAATATAAAAATAAAAAAAAAATAAATGCAATCCCGCACGGG
TCAGACATGCAGAAATCTGTATGTCTCTCCTTACGATTTTAGGTGAAGAA
AAAAAGGCGTTGGAAGTACAATCAAGGTCATAATATATTGAGAATTTTGG
CTATTTTAACGTTTTTTAAGATTTAAAGTTCTGGCGAGAAAGTCGATTTT
TGGCTATCTTTTTAATTTAATCGAATATTTCAATTTGGGAGGGGTTGGCA
GACTTCCAGGCTATATTCTGAGTCTTATTGGACTATTTTTGAACTTTTGG
ATCCTCAGATCCTAAGCTCTTAAGTCTCATGTTAAAACTCAGAGTTAAAA
CTCTACCCTTCCAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTCA
AAAACTTCCTGGTGGATTTCCCTTTTTTCTCAAATATTATGACCTTGATT
GTAGCTTCTAGTCGGTTATCTTCCTTTTCTCAGGAAACTAATATTTAATT
AGTGTTTACATTATTTGAGTGACAGTTTTATTATAAGGTTATAAGTAATA
ACCGACTAGTTTACTAGTCTACCAATTTCATAGTTGGCACCCCCATAAAA
TTAAGCCAGGTCGCTTACTGGGGAAAATAGCCGTGTTTTTTTCCAAATCT
TACAGAAGCTCAGAGAAAACCACTTGATGATTCTTGTCTTAACCCTGTTA
TACTTTAACTTAACAGGGCTAAACTATCTCCCTTACCTTATTTTGACATA
AAAAACTGTCATACAAACAAATAATCCTCTTTGTACCGCATGTACTGAAT
TCTCTTTCGCGTAAAAATTTTTCTAGTGGGGGGGGGGGCCGAAAAAATAT
TGGGCCTTATGAGGGGGGTTCGAAAATTTTTTCCAGGTTAGGGGGGGGGG
GGGGGTGCGAAAAAATATTGGGTCTTATGAGGGGGGTTCGAAAATTTTTT
TCAGGTTAGGGGAGGGGGTGCGAAATTTTTTTTGGATTTTTTAAAATATC
CTCCACCCCCCTCTAGTAGATACTTTATGACCGCTCCCTTAGTACATGAT
TGTAAAATTTGTAAATGGAAAAATAAAAGCCAAATCAAGAAAATATTTCT
TTACAGAAACTATCTACCAAAGTTGAAAGAGTAAAGAGTTTACCTAATAT
CCATGATCCATGCATGATATGTCAAAGCAAACTGCAAAAAAGACAATTTC
ATACAGAAATGCATGAAAAATCAGATTCGAAATATTTGAAGATTTGAAAA
TGGTTAGCACTTAAAGGGATTATACAGTGTTATATACACCCGACTCGTCT
GAAACTGATGTCAGCAAAATTTTAATAAAAGATTCCTTTCAAATTTGTAA
ATAAAAGGAAGAAAAAAATCTTGCTCCACATTTTTCTTTATTCATTACAA
AAGATTCTATTTATTTCAATCTGCTGAATCAACATACATTATGACTATGT
AAAAGGTCAATAGCTTTAAAATATATCTAATCATAAATATATGTTGGTAT
ATATAAATGTTTATCAGTCATCTGTTCTTCAAAAATACCCGACAGTTTGT
ACCCTGTCTCATGAAAATAACAAAACGAAACAGCAGATGGATAAAATATT
CATTGTAAAGTTATTGCCTAGAAAAACCTATCTGCTGTTCACCGATGACG
TCATTACCTAGAAAATGCTATCTGTTGGTCACTGATGACGCTGTCTCCTG
TAATAGAACAACATATGTTTTGAAGTAAATTGACCCTCCTAGAAAATGAG
ACCCGCTGTTCACTTTGTCATAAAAACCGTCTCCTAGCAAAGAACAGCAG
ATATTTCGTAACAATGGCTCGTCGAATGCTTCTGAAGAAATTGTTATTGA
AGAAGATTCAGAGACATATATTGATAAAATGCAGAACATAAAGATAGTTT
AGAAGCCAATACTCCTCTGTTTATAAATTGTGTGATTTTCAGGTTTCATA
TATTTTGATCACTTTCGTTTTCAAAACCTTGGAGAATCGGGCATGCCCGG
CCCAAATCGAGAACACCACACATCGAAAAGCGTGGTAACATCACAGACCC
GAGAAGCAAAAGAAAATCAAAAGAAATCGATCCAATAGCAAGGTCGTCCT
CTCTCCAACATATGTTTTTATATTCTCTTTGGTTTGCAACCAAACATGCC
ACCTGAGATTTAGCTTTAAAAGAAATTTTAACAATATTAACACGACTTAA
CAATACCTTATTCATACCTTATAATTGTCTAAATGCACTACAGTATCTCC
TCCAGGATTTTCTAGTTACTATGGAAAGCTATTCACCTGAAATAATGGGA
TGTTCCATTAAATTTTCATACAGGGGGTGGACGAACCTTTTTAAGGCAAA
AAAAAGATTTTTAGAAATGTGGTAATACCCCCTCCCCTGGAAAAGGCAAA
ATTTGCAAAAGAAGTCTTGGAAAAATTATTTTCATACCTTAAAAGTAAGG
GTGGACGAACAAAAATTAAAGTCTATTCACGATAAGTGTGCACTCTGTAC
CACTCTTTTTTCATTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTA
TAAATTTGGTATCATTGGAAAGATATTAATTTAAAATAAAAAAATCTTTA
AAAAAATTCTAAAAACGAAGATGAAAATAAAGAAGAAAAAATGAAGATCT
TGTAGAGAAGTGCTATCACTTTCATTTTCATTGGAGAGATTCTTTGATCT
TAGGAGGTCATCACTGTGAAGAAATTTTATTAAAATATTTATTCAATATA
AAGTTATGATACAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAGATA
ACAGCAGAAAACAGGGTTTTTAGACGTCAATTAGTTTCTAACTTCGTTTG
ATATTTCTTGACTGAATTATCATTTTTTAGAAATTTGGACAAACATATCC
AGGGGGTAGTTTTTCATTTTTCCAGTAGGTCAAAGGTTATTCTAAAATTT
CCAGGGGGTAGACTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTCA
TTTACCTATAACTTTTGAAGAAATTCTTCAATCTTTATAAATTTGGTATC
ATTGGAAAGATATTAGCGAGTGGAAAAATTTAAAATAAAAAAATCTTTAA
AAAAAGTATGAAATTGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCT
TGCTTCTCTGCTATAACTTTCATTTTCACTGGAGAGATTTTTTGATCTTA
GGAGGTCATCACTGCGAAGAAATTTCATATTTATTCATTATAAAGTTATG
ATACAAAGTTGATAAGTGATTGACCCCAAAAAACAGCAGAAAACAGCAGA
AATCAACGTTTTTAGACTTCAATCAGCTTATAATTTTGTTTGATATCTTT
TGACTGAATGATTATTTTAGAGAAATTTTTTCACAGTGATGACGTTCGAT
GATCAAGGATTCAGTTCAGTGAAAATGATAGTTATAGCACTTTTCTACAA
GATCTTCATTATTTTCTTCTTCATTTTCATCTTCATTTTTAAAAGAAAAA
CAGACGTGAACAGACTTTAAATAAAGTAAGAAATATCCATTTTAGAACAA
GACGCAAGTGATATCTATCTACAAAAATCTAACCATAATTTCAACCATTT
TTGATGACCATACTCTATAGATATGGGGGTATACTCTAAATGGGGGGTTG
TACTTTTACGGTGTGACTGGATTGGCCCTTTTTAAGTACGGTATTACGGA
ATTTGACGAAAAAAAAGACGGGAAAACGGTAACAGTATTTAGCCTATTTT
TTTGACATTATGCCGGTATTTTAACCTCTACAAACCGGTCGGTGTTATCA
TTTTTTTCAATTTTCGGGATTCTGGGGATTCAGCCAAAATTTTGACGGGA
AAAAGGTATTTCGAACCCCTTCAAACCCCCCCCCCATAAATTGAACATTT
ACGGAACATAGGGACTCGAAATGTCTTATTCTCTTAGTGTTAGTCAGACC
TTAGACTGTCTGTTCATGTTGAGTGTTCGTATAGTATAGGGTTTTGTATA
TAGATTATTTATGACAACATTGCATACACTGGAATTTATTTCTTTTTGGG
ATATTTTGTGATGTATTTTTCCGTTGTTTGAGTAGAGTGTGTGTGGAGTC
TATTTTTGTATGTTTTTTTTGCAATGGTAAATGTGTTGTAAACTGACCAT
ATGAATGCGCATGTTAAGAATATACTTTAGGGTCCGTGTTTATATTGAAA
GGTGCATTTTGTACAGCTACAGTACATGTAAATGGACCTTTAGGTCTTAT
TTAGACGACCGACTTTCTACCGACTTTTGCCAAAGAGAGTTTACACGTGT
TGTTGCCGTCAAATCAATTCATGCCCCTTTTTTAATCCCATAGAACCAAA
GATGAACAAGGAAGATAAACAACACGAACTCGTGCAAGACGACCCCCGAA
CAGCCTACCCGATGGGAGCACCGCCCGCTTACTCAGAAAAGTAATGACAA
TTATACGTATTACGTCATTGCATATTTAAAGTCTATTCACGATAAGTGTG
CACTCTTTTTTCATTTACCTATAACTTTGAAGGAATTCTTCAATTTTTAT
AAATTTGGTATCATTGGAAAACGCTGTTTTCTGCTGTTTTCTGATTTTTT
TTAGGGTCAATCACTTATTAATTTTGTATCATAACTTTATACTAAATAAA
TATTTTAGTAAAATTTCTTCACATTGATGATTTCCTAAGATCAAAGAATC
TCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040253-exon-sc0002366-1575043694:16346..16527 | TCONS_00040253-exon-sc0002366-1575043694:16346..16527 | Clytia hemisphaerica | exon |
| TCONS_00040253-exon-sc0002366-1575043694:9174..9534 | TCONS_00040253-exon-sc0002366-1575043694:9174..9534 | Clytia hemisphaerica | exon |
| TCONS_00040253-exon-sc0002366-1510915933:16346..16527 | TCONS_00040253-exon-sc0002366-1510915933:16346..16527 | Clytia hemisphaerica | exon |
| TCONS_00040253-exon-sc0002366-1510915933:9174..9534 | TCONS_00040253-exon-sc0002366-1510915933:9174..9534 | Clytia hemisphaerica | exon |
| TCONS_00040253-exon-sc0002366-1491911889:16346..16527 | TCONS_00040253-exon-sc0002366-1491911889:16346..16527 | Clytia hemisphaerica | exon |
| TCONS_00040253-exon-sc0002366-1491911889:9174..9534 | TCONS_00040253-exon-sc0002366-1491911889:9174..9534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002366 | supercontig | sc0002366:9174..16527 - |
Blast
The following BLAST results are available for this feature:
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