TCONS_00040249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040249
Unique NameTCONS_00040249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040249 ID=TCONS_00040249|Name=TCONS_00040249|organism=Clytia hemisphaerica|type=transcript|length=1610bp
ACATAGGATATATGGAATCTAAAGTCCGAACAATGGTCATTGTTTTGCAT
TGTTCTTAACAATGTCTTCGCATGCGCACACTTCGTCGGCGCGAATTCTA
GCGGGAAgttcaaaatggcgattttcttacactgattaGTTTCTCCACTT
TTTTTGGTGACGCgggaattttttcatattttgattgatttcatCGCATT
GGAAAACCCAGTGTGGCTTTATTTCAAAGATTGTCTACCTTTTGGGGGTT
TCCCTTTGAAATTTGACAGATTGGACTCGTTTAtccaaaattattcaaat
ttgtttttgtggTAGTTGCACGAGGAGACACAAGTTAGAGAGAACTCAGA
ATGGCCGAAAACCATAATGCTAAGTTGCAAAGGATTTGCAGAATATGTTG
TATGGTGATCAAAACCGATAAATCTTACACCGAAAAAAGACATATCACCG
ACTTTACAACCGAGATGAAAGCATTGTTTGACATTGACGTGTTGAGTGAT
ACTCATGCCCCGCCTTATCTTTGTGGAAATTGTAAGAGAAAGCTTGAACT
CAAGAGAAAACATCCGCAATACTCAACTGAAACTGAATTGTTTAATTTTC
TGGAACATCGTGATGAATGTGATGTTTGCAAAAGATTGGTACCAATACGC
TTTAGTTTAAAGACAGTTGCACCCTCACTTCCTAAATTCGAGAAAATTGG
TAATGATTATGGCTTCCTTAAATTGAGGACTGATGAAGACTTTCTAGTAC
TCTCAAAACCAGTAAATCTAGAAAACACAGTTAAAATATATATTAACTGT
CAAATTGATCCTAGTTGTCAATGGAAGGTGTTTGTCAATAATAGACAGCT
TGCAGCTCAACATGAACTTTACCAAAAGTTTGGTTCGGTATTGTCGATGA
AAAATGCTAATGAATTTTTCGAAATGTTGGCATTGTACAATGTATGTGAG
GGTAATACAAGATATCAGGAACTTGTCAAGAAAAAAGTTGATAAAGGAAG
TGATCTCACATTTCTCGACAAGCAAGGAAAAGTTGCTGCTTGCATCGAAG
CACCTGGATTCAACCAAATCCATCCAGACAAGCTTACAATCCGCCATGTA
AACTGTGAATTGATTTCCAAAGATAATATTAAATGTAAAGTTTGTGCAGA
CTATGGACGTAAAATTTTATCTTCCATGTCCAGCAGGGCTCAAAAACTTC
CAACGACTAACCACCCAAACACTCCAAATATTTATCTCACTCGCCAACAA
TTGGAAAACAAAGCCAAAACATTGCAAAGGGATAAAAGAGAACTGCAAAA
TGAAATTAGACGCTTGAAGACTAAAGTAAAAAAGCTTATGACTAATGAAG
CTGTGGCATTGCCTGATGAATGGAAAGAAGTCATTCCAGCTGTTTTTGAA
AGTAATGATGCAGGTTTTCCAGCTGACACACCCCAAGGAATCTTATGgga
acaacaacaaaaatatgCATCCTTGAAAGATAAAAGGGGAATGCGCTGGC
ATCCTTTAATCATTCGATGGGCAATCAGTATCTTCTTGAAATCTCCAGCT
ACTTACAGGCATCTCAAAGCTGGAGCATTTCTCAACCTACCCAGTGAAAC
AACGCTGANN
Run BLAST on NCBI

protein sequence of TCONS_00040249-protein

>TCONS_00040249-protein ID=TCONS_00040249-protein|Name=TCONS_00040249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
MAENHNAKLQRICRICCMVIKTDKSYTEKRHITDFTTEMKALFDIDVLSD
THAPPYLCGNCKRKLELKRKHPQYSTETELFNFLEHRDECDVCKRLVPIR
FSLKTVAPSLPKFEKIGNDYGFLKLRTDEDFLVLSKPVNLENTVKIYINC
QIDPSCQWKVFVNNRQLAAQHELYQKFGSVLSMKNANEFFEMLALYNVCE
GNTRYQELVKKKVDKGSDLTFLDKQGKVAACIEAPGFNQIHPDKLTIRHV
NCELISKDNIKCKVCADYGRKILSSMSSRAQKLPTTNHPNTPNIYLTRQQ
LENKAKTLQRDKRELQNEIRRLKTKVKKLMTNEAVALPDEWKEVIPAVFE
SNDAGFPADTPQGILWEQQQKYASLKDKRGMRWHPLIIRWAISIFLKSPA
TYRHLKAGAFLNLPSETTLX
Run BLAST on NCBI

transcript from alignment at sc0002365:15208..18060+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040249 ID=TCONS_00040249|Name=TCONS_00040249|organism=Clytia hemisphaerica|type=transcript|length=2853bp|location=Sequence derived from alignment at sc0002365:15208..18060+ (Clytia hemisphaerica)
ACATAGGATATATGGAATCTAAAGTCCGAACAATGGTCATTGTTTTGCAT
TGTTCTTAACAATGTCTTCGCATGCGCACACTTCGTCGGCGCGAATTCTA
GCGGGAAgttcaaaatggcgattttcttacactgattaGTTTCTCCACTT
TTTTTGGTGACGCgggaattttttcatattttgattgatttcatCGCATT
GGAAAACCCAGTGTGGCTTTATTTCAAAGATTGTCTACCTTTTGGGGGTT
TCCCTTTGAAATTTGACAGATTGGACTCGTTTAtccaaaattattcaaat
ttgtttttgtggTAGTTGCACGAGGAGACACAAGTTAGAGAGAACTCAGg
tgagttttgatttttcaatatcTTCTGAAAtacatttcctttttttatga
ttttttctgTGGCCACTCATGAATATAGCTAGAACACACTTATATCAGTT
TAATTTGCAGGAACTTACAGGATTTTGGAGAAATTGGCTATTATTTTGCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTCTGTAAAATTGATTTGCTtttat
tttgatctttcagAATGGCCGAAAACCATAATGCTAAGTTGCAAAGGATT
TGCAGAATATGTTGTATGGTGATCAAAACCGATAAATCTTACACCGAAAA
AAGACATATCACCGACTTTACAACCGAGATGAAAGCATTGTTTGACATTG
ACGTGTTGAGTGATACTCATGCCCCGCCTTATCTTTGTGGAAATTGTAAG
AGAAAGCTTGAACTCAAGAGAAAACATCCGCAATACTCAACTGAAACTGA
ATTGTTTAATTTTCTGGAACATCGTGATGAATGTGATGTTTGCAAAAGAT
TGGTACCAATACGCTTTAGTTTAAAGACAGTTGCACCCTCACTTCCTAAA
TTCGAGAAAATTGGTAATGATTATGGCTTCCTTAAATTGAGGACTGATGA
AGACTTTCTAGTACTCTCAAAACCAGTAAATCTAGAAAACACAGTTAAAA
TATATATTAACTGTCAAATTGATCCTAGTTGTCAATGGAAGGTGTTTGTC
AATAATAGACAGCTTGCAGCTCAACATGAACTTTACCAAAAGTTTGGTTC
GGTATTGTCGATGAAAAATGCTAATGAATTTTTCGAAATGTTGGCATTGT
ACAATGTATGTGAGGGTAATACAAGATATCAGGAACTTGTCAAGAAAAAA
GTTGATAAAGGAAGTGATCTCACATTTCTCGACAAGCAAGGAAAAGTTGC
TGCTTGCATCGAAGCACCTGGATTCAACCAAATCCATCCAGACAAGCTTA
CAATCCGCCATGTAAACTGTGAATTGATTTCCAAAGATAATATTAAATGT
AAAGTTTGTGCAGACTATGGACGTAAAATTTTATCTTCCATGTCCAGCAG
GGCTCAAAAACTTCCAACGACTAACCACCCAAACACTCCAAATATTTATC
TCACTCGCCAACAATTGGAAAACAAAGCCAAAACATTGCAAAGGGATAAA
AGAGAACTGCAAAATGAAATTAGACGCTTGAAGACTAAAGTAAAAAAGCT
TATGACTAATGAAGCTGTGGCATTGCCTGATGAATGGAAAGAAGTCATTC
CAGCTGTTTTTGAAAGTAATGATGCAGGTTTTCCAGCTGACACACCCCAA
GGAATCTTATGggaacaacaacaaaaatatgCATCCTTGAAAGATAAAAG
GGGAATGCGCTGGCATCCTTTAATCATTCGATGGGCAATCAGTATCTTCT
TGAAATCTCCAGGTATGTTTACAGATCAAGCTTGAAAAAAAATNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCAAATTTTTAGGGGCCTTTGTAGGATGGCACCAAC
ATTTACCAAAAAAATTGGAGGGAGTGGGAATGATGGATGATGGGTGGGAt
caaaattttggtcaatttagtCATATACAAATGACTACAGGCTGTTTTAA
ATTAAAAGTATGTACCAGCAAATCAAAAATGTGCATCATGTTAAATAAAA
TGCTagttattgttatattgtggAATTGTTTGCTTGTGTTTGGTGATGCA
TTTAGAGCGAGTTCNTGTTATATTGTGGAATTGTTTGCTTGTGTTTGGTG
ATGCATTTAGAGCGAGTTCTTCTAAACAAATTTTTGCTGCAAAAAAGGGG
GAATTAGTATAatggggggatgaaataaacatAGGGGGATCATATTCCAA
TGCAAACTATGCTTAGCTCTACAAAGCTCaaaaaattgacctatcaaatt
ttatttgaagATGTTCATTGTAAGCCTTTGTTTATTTTCAGCTACTTACA
GGCATCTCAAAGCTGGAGCATTTCTCAACCTACCCAGTGAAACAACGCTG
ANN

Coding sequence (CDS) from alignment at sc0002365:15208..18060+

>TCONS_00040249 ID=TCONS_00040249|Name=TCONS_00040249|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at sc0002365:15208..18060+ (Clytia hemisphaerica)
ATGGCCGAAAACCATAATGCTAAGTTGCAAAGGATTTGCAGAATATGTTG
TATGGTGATCAAAACCGATAAATCTTACACCGAAAAAAGACATATCACCG
ACTTTACAACCGAGATGAAAGCATTGTTTGACATTGACGTGTTGAGTGAT
ACTCATGCCCCGCCTTATCTTTGTGGAAATTGTAAGAGAAAGCTTGAACT
CAAGAGAAAACATCCGCAATACTCAACTGAAACTGAATTGTTTAATTTTC
TGGAACATCGTGATGAATGTGATGTTTGCAAAAGATTGGTACCAATACGC
TTTAGTTTAAAGACAGTTGCACCCTCACTTCCTAAATTCGAGAAAATTGG
TAATGATTATGGCTTCCTTAAATTGAGGACTGATGAAGACTTTCTAGTAC
TCTCAAAACCAGTAAATCTAGAAAACACAGTTAAAATATATATTAACTGT
CAAATTGATCCTAGTTGTCAATGGAAGGTGTTTGTCAATAATAGACAGCT
TGCAGCTCAACATGAACTTTACCAAAAGTTTGGTTCGGTATTGTCGATGA
AAAATGCTAATGAATTTTTCGAAATGTTGGCATTGTACAATGTATGTGAG
GGTAATACAAGATATCAGGAACTTGTCAAGAAAAAAGTTGATAAAGGAAG
TGATCTCACATTTCTCGACAAGCAAGGAAAAGTTGCTGCTTGCATCGAAG
CACCTGGATTCAACCAAATCCATCCAGACAAGCTTACAATCCGCCATGTA
AACTGTGAATTGATTTCCAAAGATAATATTAAATGTAAAGTTTGTGCAGA
CTATGGACGTAAAATTTTATCTTCCATGTCCAGCAGGGCTCAAAAACTTC
CAACGACTAACCACCCAAACACTCCAAATATTTATCTCACTCGCCAACAA
TTGGAAAACAAAGCCAAAACATTGCAAAGGGATAAAAGAGAACTGCAAAA
TGAAATTAGACGCTTGAAGACTAAAGTAAAAAAGCTTATGACTAATGAAG
CTGTGGCATTGCCTGATGAATGGAAAGAAGTCATTCCAGCTGTTTTTGAA
AGTAATGATGCAGGTTTTCCAGCTGACACACCCCAAGGAATCTTATGgga
acaacaacaaaaatatgCATCCTTGAAAGATAAAAGGGGAATGCGCTGGC
ATCCTTTAATCATTCGATGGGCAATCAGTATCTTCTTGAAATCTCCAGCT
ACTTACAGGCATCTCAAAGCTGGAGCATTTCTCAACCTACCCAGTGAAAC
AACGCTGANNATGGCCGAAAACCATAATGCTAAGTTGCAAAGGATTTGCA
GAATATGTTGTATGGTGATCAAAACCGATAAATCTTACACCGAAAAAAGA
CATATCACCGACTTTACAACCGAGATGAAAGCATTGTTTGACATTGACGT
GTTGAGTGATACTCATGCCCCGCCTTATCTTTGTGGAAATTGTAAGAGAA
AGCTTGAACTCAAGAGAAAACATCCGCAATACTCAACTGAAACTGAATTG
TTTAATTTTCTGGAACATCGTGATGAATGTGATGTTTGCAAAAGATTGGT
ACCAATACGCTTTAGTTTAAAGACAGTTGCACCCTCACTTCCTAAATTCG
AGAAAATTGGTAATGATTATGGCTTCCTTAAATTGAGGACTGATGAAGAC
TTTCTAGTACTCTCAAAACCAGTAAATCTAGAAAACACAGTTAAAATATA
TATTAACTGTCAAATTGATCCTAGTTGTCAATGGAAGGTGTTTGTCAATA
ATAGACAGCTTGCAGCTCAACATGAACTTTACCAAAAGTTTGGTTCGGTA
TTGTCGATGAAAAATGCTAATGAATTTTTCGAAATGTTGGCATTGTACAA
TGTATGTGAGGGTAATACAAGATATCAGGAACTTGTCAAGAAAAAAGTTG
ATAAAGGAAGTGATCTCACATTTCTCGACAAGCAAGGAAAAGTTGCTGCT
TGCATCGAAGCACCTGGATTCAACCAAATCCATCCAGACAAGCTTACAAT
CCGCCATGTAAACTGTGAATTGATTTCCAAAGATAATATTAAATGTAAAG
TTTGTGCAGACTATGGACGTAAAATTTTATCTTCCATGTCCAGCAGGGCT
CAAAAACTTCCAACGACTAACCACCCAAACACTCCAAATATTTATCTCAC
TCGCCAACAATTGGAAAACAAAGCCAAAACATTGCAAAGGGATAAAAGAG
AACTGCAAAATGAAATTAGACGCTTGAAGACTAAAGTAAAAAAGCTTATG
ACTAATGAAGCTGTGGCATTGCCTGATGAATGGAAAGAAGTCATTCCAGC
TGTTTTTGAAAGTAATGATGCAGGTTTTCCAGCTGACACACCCCAAGGAA
TCTTATGggaacaacaacaaaaatatgCATCCTTGAAAGATAAAAGGGGA
ATGCGCTGGCATCCTTTAATCATTCGATGGGCAATCAGTATCTTCTTGAA
ATCTCCAGCTACTTACAGGCATCTCAAAGCTGGAGCATTTCTCAACCTAC
CCAGTGAAACAACGCTGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024425XLOC_024425Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040249-proteinTCONS_00040249-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040249-exon-sc0002365-1491911889:15208..15556TCONS_00040249-exon-sc0002365-1491911889:15208..15556Clytia hemisphaericaexon
TCONS_00040249-exon-sc0002365-1510915933:15208..15556TCONS_00040249-exon-sc0002365-1510915933:15208..15556Clytia hemisphaericaexon
TCONS_00040249-exon-sc0002365-1575043694:15208..15556TCONS_00040249-exon-sc0002365-1575043694:15208..15556Clytia hemisphaericaexon
TCONS_00040249-exon-sc0002365-1491911889:16071..17269TCONS_00040249-exon-sc0002365-1491911889:16071..17269Clytia hemisphaericaexon
TCONS_00040249-exon-sc0002365-1510915933:16071..17269TCONS_00040249-exon-sc0002365-1510915933:16071..17269Clytia hemisphaericaexon
TCONS_00040249-exon-sc0002365-1575043694:16071..17269TCONS_00040249-exon-sc0002365-1575043694:16071..17269Clytia hemisphaericaexon
TCONS_00040249-exon-sc0002365-1491911889:17999..18060TCONS_00040249-exon-sc0002365-1491911889:17999..18060Clytia hemisphaericaexon
TCONS_00040249-exon-sc0002365-1510915933:17999..18060TCONS_00040249-exon-sc0002365-1510915933:17999..18060Clytia hemisphaericaexon
TCONS_00040249-exon-sc0002365-1575043694:17999..18060TCONS_00040249-exon-sc0002365-1575043694:17999..18060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002365supercontigsc0002365:15208..18060 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.475714	0.702233	0.432013	0	4.57372	3.54424	1.77059	2.13909	1.04404	1.54696	0.951702	1.89047	0.941799	0.54041	0.875881	1.18752	0.555706	0.94919	0	0.811175	1.29865	1.43339	0.379349	0.808356	0.392013	0.634804	1.8879	1.0197	0.223901	0.230752
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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