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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040245 ID=TCONS_00040245|Name=TCONS_00040245|organism=Clytia hemisphaerica|type=transcript|length=441bp
CATATCCACATCAAAATTGTTGACAATCCtgttaaaattctttaaaaagc
cCATAGAATTGGAATAGGACTCCCAATTCAAGATGTTGACGTGTATGTGT
ACGTGTATGAGAACATTTTGAACAAGGAACAAGAACAAGTTGAAATTTTA
GAGAATAGTATGGCTTGATGGTTTCTGCACGTTTTCAATCAAAGTATCAA
AGATTCTTACTCAGAGCTGAATTATGACTGTTACGTAAAAACTTTTACCC
AGGCCACGTTGGATATGTAGTCGTAATGAAGTTGTACGTTGTTCGATAAA
CATATATTGTATGGTTGCCAAAATAATTGGTCTTGATTTACTGTAACTAA
TACAGAACTTGACTGTTTATGTGATTCCTTGTTGTTTTAAATCTTATGAC
ACAATAAGAATGGAAAGAGTAGTAGTATATATTAGTAGGCT Run BLAST on NCBI transcript from alignment at sc0002362:5362..7365+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040245 ID=TCONS_00040245|Name=TCONS_00040245|organism=Clytia hemisphaerica|type=transcript|length=2004bp|location=Sequence derived from alignment at sc0002362:5362..7365+ (Clytia hemisphaerica)
CATATCCACATCAAAATTGTTGACAATCCtgttaaaattctttaaaaagc
cCATAGAATTGGAATAGGTGAGTTTGTTaaatgattttatttccatCATA
AAGCTTTTAAGAGAAATAAAAGGGTTACAGAGTCATTTTCTTTCCTGGCA
AGTTGCCCTGAAGAAAGGCTTCCCTTTATATGCTTTTTATGAGGCCTTGA
AGTGATGCTGAAACTTTACACTCCCCACTCCCTTGGCCTTTGGTTATTTG
CTGCATCAATTCTTCACTTTAGTCACTCCCAAAGATCATTTCAGTAGCCT
CAACCGTCTTAAACTAAGCAAATTGTTGGTGGTCACTCTACGACCGATAC
TTTTGTGGCGGGCTAAAATTGCAATCAATATTGGAATGACTAAACTACAG
CTATGATAATGCTGGGATATCTTGAATCATGGGCAATATAGCAACAACTG
CTAACAGCCAATGAGAGATAAGCAAGTTGTTTTGGATAGGCTGCTTAGGC
ATAAAATGCTAGAAATAGTTGCTATCTTGCCCATCAGTAAAGATTAGATG
TATAAATACCAACAATCACCAAAAATTTGAACGTGCATgtaggggggggg
tactagggcaagatggattactacggggatgctccgctgaccagggtacc
ttttttaacctccacgagtcccaggtagggtcggaaaaacaccaaaatag
aaaaatcagtcccatGTCCTATTTatggaaaatttgggaaaaaagtagaa
aatttgagaaaattttggaccattcagggtcacttttttcgcaaatttat
agtcccacgtagggttcatttttcgaacctcagcggagcacccccgtcag
TCGACAAGAGggtagtaccccctccccccgggcaTGTAGTTTTCACCTTA
CTGTTTAAAATACCTAGTCAAAACACTTCAAGCAGTCAAGTGAAGTTAAT
ctgtacaagtttttttataatcacTCAACTTTACATGCACGTTCAACTTT
TCGTGAATTGGCAGTTTTTACATTTGCATTATTTAAGTAGTATTGATAGT
GTAATACACGCTACAGGTGCTGTGGTATATTGCTcactgaccttggttgc
tgcactgTAAAATATCACGGTTAAAATTAAGGACAACTTTATTGTCCTAT
TTTGGGACCCAAGAACGTAAAAAGTGGGCCATTTTCCTATTAGGAGTTAA
AACAACCATTCAGCTTTAGTTTAAACTAGGTTTGGTATAGACTAAGCTTA
AATGGCCCTTTTTAGGACAATCTTTTTGTCTGGACAccaaattagccata
tttggtccAAGTGAttttaaccatcttttaccCTTTCTAATGTTAATATA
GAGGTTTTCTGAGATTTTCCCTAATTTTTTATGTAATTTGGGCAAGTTAT
TACAAAAACCTTATTTTAACCCATTTTTGGCATGGTGCATGATTTGTACC
TTCTTGTTGACAGTGTCCAGCTATAAATTGTAGAGTGCTACAGGATTTGG
ATCATTTGATTTGTCATTATTGCAATTACATTATTTTGGATTATGTTGCC
ACACAGTTGTTTTAATAGGACTGCACAAACCAAATCTGCTGTCAATAAAT
gtctgaaaatttctttttataccTATTCAGGACTCCCAATTCAAGATGTT
GACGTGTATGTGTACGTGTATGAGAACATTTTGAACAAGGAACAAGAACA
AGTTGAAATTTTAGAGAATAGTATGGCTTGATGGTTTCTGCACGTTTTCA
ATCAAAGTATCAAAGATTCTTACTCAGAGCTGAATTATGACTGTTACGTA
AAAACTTTTACCCAGGCCACGTTGGATATGTAGTCGTAATGAAGTTGTAC
GTTGTTCGATAAACATATATTGTATGGTTGCCAAAATAATTGGTCTTGAT
TTACTGTAACTAATACAGAACTTGACTGTTTATGTGATTCCTTGTTGTTT
TAAATCTTATGACACAATAAGAATGGAAAGAGTAGTAGTATATATTAGTA
GGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040245-exon-sc0002362-1491911889:5362..5428 | TCONS_00040245-exon-sc0002362-1491911889:5362..5428 | Clytia hemisphaerica | exon |
| TCONS_00040245-exon-sc0002362-1510915933:5362..5428 | TCONS_00040245-exon-sc0002362-1510915933:5362..5428 | Clytia hemisphaerica | exon |
| TCONS_00040245-exon-sc0002362-1575043694:5362..5428 | TCONS_00040245-exon-sc0002362-1575043694:5362..5428 | Clytia hemisphaerica | exon |
| TCONS_00040245-exon-sc0002362-1491911889:6992..7365 | TCONS_00040245-exon-sc0002362-1491911889:6992..7365 | Clytia hemisphaerica | exon |
| TCONS_00040245-exon-sc0002362-1510915933:6992..7365 | TCONS_00040245-exon-sc0002362-1510915933:6992..7365 | Clytia hemisphaerica | exon |
| TCONS_00040245-exon-sc0002362-1575043694:6992..7365 | TCONS_00040245-exon-sc0002362-1575043694:6992..7365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002362 | supercontig | sc0002362:5362..7365 + |
Blast
The following BLAST results are available for this feature:
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