TCONS_00040243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040243
Unique NameTCONS_00040243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040243 ID=TCONS_00040243|Name=TCONS_00040243|organism=Clytia hemisphaerica|type=transcript|length=315bp
TGGCCCCTGATGTGTATTATTTAGGGTATGTATGGATGGTAGTCAGAGCT
CCACCAATTTCCGTCGATGCATGCTGATTTCTGATCATAAAGTTTGAGGT
CTGATTCtagtttttttaaaactttggacTTCAGTGAGGCTCGAACTCAC
TTATGAAAAAGTCGCATAACCTCAAGTCCATCACTTTATCCACTCGACCA
CGGCAACTGGGGTCGATTACAAATCTtttaatatttataatacaTTCTAC
CGTGAGCCTATCAACAGCTATATAGAACGGTTAAAGTCACGGTAGGCTAA
AAATAAAGTTCCGTG
Run BLAST on NCBI

transcript from alignment at sc0002359:9607..9921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040243 ID=TCONS_00040243|Name=TCONS_00040243|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at sc0002359:9607..9921 (Clytia hemisphaerica)
CACGGAACTTTATTTTTAGCCTACCGTGACTTTAACCGTTCTATATAGCT
GTTGATAGGCTCACGGTAGAAtgtattataaatattaaaAGATTTGTAAT
CGACCCCAGTTGCCGTGGTCGAGTGGATAAAGTGATGGACTTGAGGTTAT
GCGACTTTTTCATAAGTGAGTTCGAGCCTCACTGAAgtccaaagttttaa
aaaaactaGAATCAGACCTCAAACTTTATGATCAGAAATCAGCATGCATC
GACGGAAATTGGTGGAGCTCTGACTACCATCCATACATACCCTAAATAAT
ACACATCAGGGGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024419XLOC_024419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040243-exon-sc0002359-1491911889:9607..9921TCONS_00040243-exon-sc0002359-1491911889:9607..9921Clytia hemisphaericaexon
TCONS_00040243-exon-sc0002359-1510915933:9607..9921TCONS_00040243-exon-sc0002359-1510915933:9607..9921Clytia hemisphaericaexon
TCONS_00040243-exon-sc0002359-1575043694:9607..9921TCONS_00040243-exon-sc0002359-1575043694:9607..9921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002359supercontigsc0002359:9607..9921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.370666	0.451251	0.356584	0.430204	1.61101	0.281976	1.04782	0.678025	0.445707	0.222544	0	0	0	0.502393	0	0	1.11666	0.323527	0.946832	0	0	2.15559	0.64127	0.458827	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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