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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040242 ID=TCONS_00040242|Name=TCONS_00040242|organism=Clytia hemisphaerica|type=transcript|length=1734bp
TTAacttagtattttatgtttgtgtagtcaGGAATCCACCAAATAATTAT
TGTAGTGCTAGAGATCTTAGAatacattcaaaaacatttttagtacATTT
CCAGGGTTCCATCCACGTCATTTCACTACACAAACAAGACACAGctgAGG
AATACAAAAGGTTACTGGAAATCACATAATGGAAACCTCAATGGAATATC
TCGCATGGAAGAAAAGTAGAACTCGAACTACAGCTCTCGCATGTATTCTG
ATTCTCGTCTATGGAATTGAAAGCCAATCACTGGAAGTGACTTTACTCTA
CTACTTCTCGGAGAACTTTGGGTTATCTTTACTTCAAGCAacattttatt
acagtgtaaaTGAGACTTTATTTGCTATTAGTAATCTTATAAGCGGAATG
CTTTTTGGAAGATACATTGATCAAACGCGAAATTTACGATTTGTGTTTTT
GCTCAATTTGGGTGTCATATGTATTGGGAACTTAATGTATTCTATCCCTT
GGCATATTTGGTTGGTATTGACTGGAAGATTTCTATGCGGCATCAATGAA
TCCTTGCAAACTGCAGTATGTGAATTCAGAAGATGCTATAATGACAAAGA
ATTGGTCAAAGTTCTTAGTTGGTATGAATTTCTTTATTCTGTTGGAATGA
ATGTTGGTCCTGGTCTTCCTATCTTATTCTCCTACGTCAATATCCATATC
GGTAGCTGGAAAATCAATAAATACAACGCAATCCAATTTTTAACCGCTGC
AATAACATTAGTCATCTTTGTAATATCTTGGTTTTTGGTTATCGATCTTT
CTAAAGATCTGGAAAAACTTGGTGAAGATGCTGTTGCGATAGCACGTGGT
CGAAAGCAGGAGGATGATCCCGAACGGGTACCTCTTGTTGAGACATGTGT
TCGAAAGCAGGAGGAGGACCAAGATCGGGTACCACTTGTTGATGCACGTG
TTCGAGAGCAGAAGGAAGACCCCGATCGGGAACCTCTTGTTGAGGAACGT
GAAAGAGAGCAAGATGAGGACCCCGAACGGGAACCTCTTGTTGACAGATA
TGATAACTCATCCAGCAACACAGATGGAGAAGCTTCTCAAGAAAGGAGGT
TACTAGGCTGGAGAGAACTCTTTAAATTAGATATTTTATCACTATGTCTA
AGTTATGGAGTCTTAAGATATTCAGTAACGACTGCAGTTGCTATGGTTAC
TTTGTATTCCGTTAATACTTTTCATTGGCAGATGAACACTTTGTCTTGGC
TTCATGTTATTGTTGGATTTGTAACCTATATCTTTCTGATGGTGCTAGTT
TATCGAAAGGTTTTTGAAGGACCCTTGGCAATATTTTATGGATATGTCAT
GGCGTGTTCACTGGCTGGATGTCTTTTGTCTCTCCTGGTTCTTCCAAAGT
TAATAGTGATACCAACAATGGCTGGACAGATAGCTTTTGGTGTAATTATT
ATGGCAACTAAGTGCTTTGTTTATTTTCAAGCTCAATCAGCAGGCAAAGT
GCTCTTGTTCAACACTGTCTCAGATTCAAATGCAAATCTAATCGATGGAT
TTAGATCAGTTTTTGGAAATGCATTTCGTATCCTCGCAAAATCaactttc
tattattttttcttatatcCTGAATATTTTTCACCTCCTTTTATAATCTG
CAGTATATTATTTGTGTGTATGCTAATTCATAGAAGGAATTTACATTTGT
CAcactaaaattaaatttagaagaGCAGACCGGG Run BLAST on NCBI transcript from alignment at sc0002359:23549..29737- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040242 ID=TCONS_00040242|Name=TCONS_00040242|organism=Clytia hemisphaerica|type=transcript|length=6189bp|location=Sequence derived from alignment at sc0002359:23549..29737- (Clytia hemisphaerica)
TTAACTTAGTATTTTATGTTTGTGTAGTCAGGAATCCACCAAATAATTAT
TGTAGTGCTAGAGATCTTAGAATACATTCAAAAACATTTTTAGTACATTT
CCAGGGTTCCATCCACGTCATTTCACTACACAAACAAGACACAGGTATGA
TCATTTTTTTTTGAAAGAAAGAATATGTATTGATTGTGGATTAGCTTGTA
CAGGTTCTCAGTTTCTTCAAGATTAGAGAGGTTGGTTTTCGCTTTACTCT
TTTTAGGTTTCTTCAAGGAGGGAAACGAGAAAACTTTATTACTCCAAAAG
TCATTTCATTTATTTGTCTATTTTGACTTATACATCAGGCATCATTACTT
TATCTTATCTTTTTATAATCGTGCAAAGGCGAGATTTTCGACTGTGAGTT
GTCGGAATAGCTTTCTATCAGCTTTTTCAGGAAAAAAAAAGAGAATTATC
TTTTGACTCACAAAGAATTGCAAAATGCAAAATGGATTTTTTAAATTCTT
GTAAAATAAACCAAGTTGCAAAGAAAGGTATGATTTTGGCGGCAAAACTT
GAGCTATGGGAAAAATAGAATTTTCAAAAATCTAGATCATGATATAACAA
ATAAATATTACATGCATTCTCATCGAATGTATGGAAGCCGAGAAAGGTCA
GTGCGTGGAAATTTTAAAATTCTGTCGCGACCTTTTTCAATGCATTATGC
AATCTTTTTCAATTTGTCGTGATCTTTTTCAATTTGTCGCGATCTTTTTC
ATTTTGTTGCCATCTTTTTCAATTTGTCGCGGTCTTTTTCAATTTGTCGC
AGTCTTTTTCAATTTGTCGCGATCTTTTTCATTTTGTTGCCATCTTTTTC
AATTTGTCGTGGTCTTTTTCAATTTGCCACGATCTTTTTCATTTTGTTGC
CATCTTTTTCAATTTGTCGTGGTCTTTTTCAATTTGTCGCGGTCTTTTTC
AATCTGTCGCGATCTTTTTTCAATTTGTCGCGATCTTTTTCATTTTGTTG
CCATCTTTTTCAATTTGTCGTGGTCTTTTTCAATTTGTCGCGGTCTTTTT
CAATCTGTCGCGATCTTTTTTCAATTTGTCGCGGTCTTTTTCAATTTATC
GTGATCTTTTTCAATTTGTCGCGATCTTTTTCATTTTGTTGCCATCATTT
TCAATTTGTCGTGTCTTTTTCAAACTGTCACAATATTTCTTAAGCTGTCG
AGATATTTTTCAAGCTCTTACGTTTCCAGAAACTGTCGCGATGTTTTCAA
GCTGTCGCATTTCCAGAAGCTGTTGCGTTTTCATGTGTATTCGTGTCAGG
GAATCCCCTTTGCCGTTTAACCTCATTGTATCAAGTGTCACGTCCCTTTC
CCCGCTACTTCGACGATGTTTTGTATATTTGTGGTCAAGATGTTGGAGGA
ATTTTCTGTGGTAACTGTGGTGTAAAAAAAAAACAAAAAAATTAAACGCG
ACAGCTTGGAAAATATCGCGATACAGCCTCTGGAAATGCAACATTTCTTC
GAAGCTCTCCCGCCGATTTTTTTTCGTATATCGCAATAACGCCATACCAC
CATATTTTCCAGCATTTACTACCATTGTAACGGACGATAATATCTTCTTC
GCAACAACTTGAAAAATATTGCTACACCTTCTGGGAACGCAATAGTCTGA
ATATTATCACGACAGTCTGAAAATTATCACGACAACTTGAAAATATTGCG
ACAGTTTAAAAAAGATCGCAACAGTTTGAAAATGATCGAGATAGGTTTTA
AAATCTCTCGCGTCCCTTCTCGGCTTCCATACAAATGGCTACCTTATCAG
CCCTTTTTACGCCGGCCCTAATTTAACGCCGGCCCCTTTTACGCCAGCCC
TTATTACAAAACGAGCCCAAAAATAACACTAATAACGGCCGGCATAAAAA
GGGCCGATAAGGTATTTGAAGGCGAGACTTTATTGAAAGCGGTAAGAGAA
AAACCCTTTCATGTTTCATCCTAGTATTTCATCTCATCAATTATTATTTC
ATGTTTCTTTAGCGTAGTTTAAGATAAAATTGAGATATTTTAGGCGTCAT
ACTTCATTTTAACTACAATACCCGTTAATTTACTTAAATCTTAGAATTTA
CTTATTTCAAGCTCCGGGTTGTAAAGGTTTTTTAAAAGAACATTCAACAA
TTTTTGTTTTAAACATTTTCTTACCTTTTTGTGAGTATTTTTTGCCCATT
TTCAAAAGAAATCGGGTCTTTTAGAGTCTACACAATGTTTTCAACTTGTT
ATTAATAATTTTGCCATTGAATTCTCATGTTCTGGTTTCAGTTTGTTTTT
AAGGATATTCTTATATCACAGGCTCTAAACTTTAACATTCCATTTTTTTA
AGATAATAGAAAAATTTATTCCAGCGATAAAAGAGATTCAAAAGTATACA
CGCAGTTGAAATTCTGCACTTTAGAAAATGCTGAAAAATGTTGAAAAATG
CTTTTAGAATATATTGCAAATTCATAAAAAAATTGGAATATAATGTTTTT
GTGAATTACGAGTCATTTTCAAGCTCTATCAATCCTTTTAGATAATGGGG
GGGGGGGGGGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGGGGGGGGGGGGGGCGATAAGTAATTCAAAGAAATAAAGTT
ATGACGGAATAAATTCGGAATTTTTATTCCACATTTAAAATACACGCGGC
AACGAAGCTCACTTCAAAGACACAAAAGAAGATAGACGTCCAGTCGTTTA
TATGTTCATGGGTACATTAAACACAGTGACCTTTTAGTACCAAATAACAC
ATCGTTTATTCAAACATTTAGTTACTAAAGTTTTTTCACGTTTACTCTAC
TTTGTTGTTGTCTAGAGATAAAATCGTTCTAAATAAGTCTAAAGTGTCAA
AGGTTGAAACTACTACTATACTATATATTGTTATAAAAGCGTCTCTAAAC
TATATAATTTCAACAGATCCAAAATCTAGATATGAATAACTGTTTGTTCA
TTAACTTTAGATTGCTATCGCCACATATTTTTGCAATCGTGTATTTTGAA
TAGTTTAGAAATTTTGAGAGCGCATTTTTGGTTTGTATGTAATGTAATGA
ATTTCAGATATTATTTCAAATAATATTATCAAACCTTATAAAACCATACA
TATTAAGAAGATTTTAAAAATCATATTTTTTATTTTAGCTGAGGAATACA
AAAGGTTACTGGAAATCACATAATGGAAACCTCAATGGAATATCTCGCAT
GGAAGAAAAGTAGAACTCGAACTACAGCTCTCGCATGTATTCTGATTCTC
GTCTATGGAATTGAAAGCCAATCACTGGAAGTGACTTTACTCTACTACTT
CTCGGAGAACTTTGGGTTATCTTTACTTCAAGCAACATTTTATTACAGTG
TAAATGAGACTTTATTTGCTATTAGTAATCTTATAAGCGGAATGCTTTTT
GGAAGATACATTGATCAAACGCGAAATTTACGATTTGTGTTTTTGCTCAA
TTTGGGTGTCATATGTATTGGGAACTTAATGTATTCTATCCCTTGGCATA
TTTGGTTGGTATTGACTGGAAGATTTCTATGCGGCATCAATGAATCCTTG
CAAACTGCAGTATGTGGTAAGGTCTTTTTTCTACGTATAAACTAGCACTG
GTCTAACCTGGGGGTAAGTTATATCCGCCATATTTGATCAATTTTCTAGA
AAAAAAATGGTATCCCGATCATTGAATAGAGCCCGAAGGAGTAAAGTAGA
ATTTTCAACCACTCCCAGTCAAGAAAAAGTGAATCCAGTTAGTTCCCATT
CCTAGCGGTTCCTTTGTTTTCGAGGACTGTATTTTTTTAAATCTAACGGG
TAACAATAGATTTTACTTTCAATCCGACGTTTGTGTAAAAACAACGCACG
GGCGTTTTGGGTGGGAAAAATATGAGACTTAATTTTCCAATTCCCAAAAA
ACTTTCTCTAGGGGTTTTAAAAATTTTTAAACCACGCCCCAAGTATAACA
AAGTACTTCTGGCTCCTCCACCGAAAAAGCGTTATCAAAATTTCACGTGG
ATATTAGTGAGTGGAACAATTTGAAATAAAAAAATATTTAAAAAAATTCT
AAAAATGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGTAGAAAA
GTGCTATAACTTTCATCTTCACTGGAGAGATTCTTTAATCTTAGGAGGTC
ATCACTGTGAAAAAAATTCATTAAAGTATTTATTCAATATAAAGTTATGA
TATAAAGTTGATAAGTGATTGACCCCAAAAAACAGCAGAAAACATTTTTG
AAACATTTTTGAAATATTTTTTCACAGTGATAACGTTCGATGATCAAGGA
TTTACTTCAGTGAAAATGATAGTTATAGCACTTTTCTACTAGATCTTCAT
TTTTTTCTTTTTCATTTTGATCTTCATTTTTAGAATTTTTTTAAATATTT
TTTTATTTCAAATTGTTCCACTCACTAATATCTTTCCGATGATACCAAAT
TTATAAAGATTTAAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGA
GTGCACACTTATCGTGAATAAACTTTAATATCGCAAGTCAGCAATCTTAC
GCATTTTCGCAAGAATTAATTTCGTAAAAGTTAATCCAATTAAAGTAAAG
AAGTTCGAGTTAAAGAAACTCTCCTGTATTTACCACAGCGATGATAAAAA
CTTCTATCGTAACCATATAGGGTTAAAAATTCTTGTTGTTCAAAGCTAAA
AAATCCAGTGTGGAAGGTGTGGAGTGCAATTTTTTCAATCGAATTAAAAA
AAATGGGCAATTTTCCCACCGGGGACGAAATTTGACTCAATTTTTCCAGC
TGGGTTGGGTTTCTAACGTGTCTGTAACACACAGGTTTCAAAATCATTGA
ATGTTGATTTTCTGTATCATATGTTCAATAACTATCACCTCAACAATATC
TATATCATATTTTTTCAATTCTAGGAGAATTCAGAAGATGCTATAATGAC
AAAGAATTGGTCAAAGTTCTTAGTTGGTATGAATTTCTTTATTCTGTTGG
AATGAATGTTGGTCCTGGTCTTCCTATCTTATTCTCCTACGTCAATATCC
ATATCGGTAGCTGGAAAATCAATAAATACAACGCAATCCAATTTTTAACC
GCTGCAATAACATTAGTCATCTTTGTAATATCTTGGTTTTTGGTTATCGA
TCTTTCTAAAGATCTGGAAAAACTTGGTGAAGATGCTGTTGCGATAGCAC
GTGGTCGAAAGCAGGAGGATGATCCCGAACGGGTACCTCTTGTTGAGACA
TGTGTTCGAAAGCAGGAGGAGGACCAAGATCGGGTACCACTTGTTGATGC
ACGTGTTCGAGAGCAGAAGGAAGACCCCGATCGGGAACCTCTTGTTGAGG
AACGTGAAAGAGAGCAAGATGAGGACCCCGAACGGGAACCTCTTGTTGAC
AGATATGATAACTCATCCAGCAACACAGATGGAGAAGCTTCTCAAGAAAG
GAGGTTACTAGGCTGGAGAGAACTCTTTAAATTAGATATTTTATCACTAT
GTCTAAGTTATGGAGTCTTAAGATATTCAGTAACGACTGCAGTTGCTATG
GTTACTTTGTATTCCGTTAATACTTTTCATTGGCAGATGAACACTTTGTC
TTGGCTTCATGTTATTGTTGGATTTGTAACCTATATCTTTCTGATGGTGC
TAGTTTATCGAAAGGTTTTTGAAGGACCCTTGGCAATATTTTATGGATAT
GTCATGGCGTGTTCACTGGCTGGATGTCTTTTGTCTCTCCTGGTTCTTCC
AAAGTTAATAGTGATACCAACAATGGCTGGACAGATAGCTTTTGGTGTAA
TTATTATGGCAACTAAGTGCTTTGTTTATTTTCAAGCTCAATCAGCAGGC
AAAGTGCTCTTGTTCAACACTGTCTCAGATTCAAATGCAAATCTAATCGA
TGGATTTAGATCAGTTTTTGGAAATGCATTTCGTATCCTCGCAAAATCAA
CTTTCTATTATTTTTTCTTATATCCTGAATATTTTTCACCTCCTTTTATA
ATCTGCAGTATATTATTTGTGTGTATGCTAATTCATAGAAGGAATTTACA
TTTGTCACACTAAAATTAAATTTAGAAGAGCAGACCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040242-exon-sc0002359-1575043694:29594..29737 | TCONS_00040242-exon-sc0002359-1575043694:29594..29737 | Clytia hemisphaerica | exon |
| TCONS_00040242-exon-sc0002359-1575043694:26072..26499 | TCONS_00040242-exon-sc0002359-1575043694:26072..26499 | Clytia hemisphaerica | exon |
| TCONS_00040242-exon-sc0002359-1575043694:23549..24710 | TCONS_00040242-exon-sc0002359-1575043694:23549..24710 | Clytia hemisphaerica | exon |
| TCONS_00040242-exon-sc0002359-1510915933:29594..29737 | TCONS_00040242-exon-sc0002359-1510915933:29594..29737 | Clytia hemisphaerica | exon |
| TCONS_00040242-exon-sc0002359-1510915933:26072..26499 | TCONS_00040242-exon-sc0002359-1510915933:26072..26499 | Clytia hemisphaerica | exon |
| TCONS_00040242-exon-sc0002359-1510915933:23549..24710 | TCONS_00040242-exon-sc0002359-1510915933:23549..24710 | Clytia hemisphaerica | exon |
| TCONS_00040242-exon-sc0002359-1491911889:29594..29737 | TCONS_00040242-exon-sc0002359-1491911889:29594..29737 | Clytia hemisphaerica | exon |
| TCONS_00040242-exon-sc0002359-1491911889:26072..26499 | TCONS_00040242-exon-sc0002359-1491911889:26072..26499 | Clytia hemisphaerica | exon |
| TCONS_00040242-exon-sc0002359-1491911889:23549..24710 | TCONS_00040242-exon-sc0002359-1491911889:23549..24710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002359 | supercontig | sc0002359:23549..29737 - |
Blast
The following BLAST results are available for this feature:
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