TCONS_00040236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040236
Unique NameTCONS_00040236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040236 ID=TCONS_00040236|Name=TCONS_00040236|organism=Clytia hemisphaerica|type=transcript|length=534bp
AGCAAACGTCATTGTACCCTTCGAGTGGAAAGTAATAATGTGGGCTAATA
AAGATCTTAAAGATGAACAACCCAACCCTAACTTACCTTCAGAGTACACC
ATCTTCAATTTCAATGTTGTTGCAAGGCCATTCGAAATTTATAAAATACA
ATGGCAAAGAAAAGATGATAATATACATACCGCACGAATTCCAGAGGACT
TAGTCGCAATGATAAATGAATTCAAATCTAAAATGATGGATTTGGTGATT
GTCTATAATTCGGAAGATGTCAATTTCGTCCCTCAAACAGTTTGTGTCCT
TGATTTTAACGGAGAGGTTTTGGTGCTGGGAATCCCAGAATATCNTTGTG
TCCTTGATTTTAACGGAGAGGTTTTGGTGCTGGGAATCCCAGAATATCCT
TTGAAAAAAACATACGAGGGGAAAGTCTATGCAAAATTCACTGGAGAGTA
TAATATCGGCTACACAAAGTATGAAAGTGGAGATTCAGCTCAAAATCTAT
CAGTGACTTGCAATGGAAGAAAGAATGCTTGGTT
Run BLAST on NCBI

protein sequence of TCONS_00040236-protein

>TCONS_00040236-protein ID=TCONS_00040236-protein|Name=TCONS_00040236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
ANVIVPFEWKVIMWANKDLKDEQPNPNLPSEYTIFNFNVVARPFEIYKIQ
WQRKDDNIHTARIPEDLVAMINEFKSKMMDLVIVYNSEDVNFVPQTVCVL
DFNGEVLVLGIPEYXCVLDFNGEVLVLGIPEYPLKKTYEGKVYAKFTGEY
NIGYTKYESGDSAQNLSVTCNGRKNAW
Run BLAST on NCBI

transcript from alignment at sc0002358:17939..20562-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040236 ID=TCONS_00040236|Name=TCONS_00040236|organism=Clytia hemisphaerica|type=transcript|length=2624bp|location=Sequence derived from alignment at sc0002358:17939..20562- (Clytia hemisphaerica)
AGCAAACGTCATTGTACCCTTCGAGTGGAAAGTAATAATGTGGGCTAATA
AAGATCTTAAAGATGAACAACCCAACCCTAACTTACCTTCAGAGTACACC
ATCTTCAATTTCAATGTTGTTGCAAGGCCATTCGAAATTTATAAAATACA
ATGGGTAAGTCAAGAAAATCGTCTCTTTTTTTTGTATACTATAATATAAT
TGGGAAAAGAACCGTCAAACTATCTGTTAAGGTGAGCGCNTATACTATAA
TATAATTGGGAAAAGAACCGTCAAACTATCTGTTAAGGTGAGCGCTAGCT
GCAGCGTTATAGACGAAAAATGAGCTGATTATCATCCTGGCAAGATGGTG
GAGCTTGGTACAATCATGGTCAAAATCTATTGAGAATTTAGCTTATTTCA
TTGTTTTTCGAAATTTGGAGTTTAGAAGTCGCTTTTGGGCTAATTGATAA
ATTTATTCGAGTATTTCAATTCGGGGGGGGGGGGGGGTTTTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTATA
AGATTTCGTAGGAATTTCCATTTTTTCTCAAATATTACGACCATGATTGT
AGAAATTCTTCATCGCTTCCGCCTCACCTTCACTTACTCGCTGAGTAGCA
TATATACCGTCTTACCTCAAAACAACGCCCTTCCATTAAACGCCCCTCCT
TTTTAAGGAAAACAAATTAATAGACGCCCTCTTTAAACGAACGCCTCTCC
CTCTAGGAAGGGCGTTTATTTTACACAAATAGTTATAAGGAATCAAAATA
TGAAGGCAAACTTAGATATATGATAATAATTGTATTCTTTTTGTCTTACT
CCGCAAAACTTTTTACTAAATTCCGTTTTTCCGCACTAAGATTGTCTAAT
TTTTCGTCTCTCCAACGAGAACCCAATTTCCGTAATTACAGCTAAATTTT
CGCCAAATTCTGCCACTCCGTCGGAAAATAGGGCCGATTGCGCTCCTCCG
CCAACCATAAAATCCCCCTTAATTAATATTTTTATACTCAAATGATAATA
ATGAACAGGCAAAATAAGGTTCCGATTCATATTAGTAAAGTAGTCTTGCT
TATAAATTATTAAATAAACACCCCTTTTTTTAAACACCTTCTCGAATAAA
CGCCCCTTTTAAAAAATGAAACAAAAACAAACACCCAGTACGTTTATTCG
AAGTAATACGGTATTGTATGAAATGGAAAATTCCAGCGGTTAAAAATATT
TAGCGTGTTGTTTGACCTGATAGAAATATCATCGGATTCACCTGCTACCT
TGAGTGGATTAATTTTCTCCATCTTTTTCAAAACTCATTTAATTTTTGCC
GGACTTATTTTCGCGAGCACAGAAAATAAAAACTTTTGGCAGGATAAAAT
TTCGCGAATCAGCCTGTTTTTGACCTAATTTTTTGACAAGAGTCATGATT
TTAAATGTTAAGCGAGGATTATATTTGTTGAATCATCAAAACTCATTTAA
TTTTTGCAAAGATTTTAAAACATTTCGTGAGCATTAAATTTCGCAAATTT
TCGGAAAAACTCGCGTATATGAATCCACTTAAGGTACATCGAAATGATAT
TCGGCAATTATGGTTCTTAGGTTTTACCGTTTTTGTGTCTCATTGTTGCA
TTATTGTGAATTGTAAAGCATCAAGATTTAATTACCGTTGCTTTAAAGGT
TTTGTTTTTAAATAAGAGAGATATCGTTTGCTTACTCGTCATTTTTTAAA
TCACAAGCTTTTTCACATTGGATTGACACGAATGTGGAGCAAGATTAGTC
ATAAAGAGGAAAAGAAAAACATTTTTTGCTTATATCAGCATAATATAACA
ATAGGTAGACACTGTCCTGATATGAAATATGTGTCTGATATGAAACGGGA
ATATTTATAAAAAAAGAAAACTTTTAAAAAAGAAAACTTTATTATTACTG
GTCCGTAGAAAAGTAAAAAATTAACATTTGTTCGTTCGTCTGTTACCAGT
TTTTTTCAGGATCGGCCCTTTAGTTGGTTATTTGCATAGTGATGCAAATC
AACAGTACCCAAAAAGAGCCGAAGCCCGATTTTCGTCTACCTATATCACG
TAGGTTCATTCAGCATGTTGCTTGTTTCTTTTATTTCTCTACAGCAAAGA
AAAGATGATAATATACATACCGCACGAATTCCAGAGGACTTAGTCGCAAT
GATAAATGAATTCAAATCTAAAATGATGGATTTGGTGATTGTCTATAATT
CGGAAGATGTCAATTTCGTCCCTCAAACAGTTTGTGTCCTTGATTTTAAC
GGAGAGGTTTTGGTGCTGGGAATCCCAGAATATCNTTGTGTCCTTGATTT
TAACGGAGAGGTTTTGGTGCTGGGAATCCCAGAATATCCTTTGAAAAAAA
CATACGAGGGGAAAGTCTATGCAAAATTCACTGGAGAGTATAATATCGGC
TACACAAAGTATGAAAGTGGAGATTCAGCTCAAAATCTATCAGTGACTTG
CAATGGAAGAAAGAATGCTTGGTT

Coding sequence (CDS) from alignment at sc0002358:17939..20562-

>TCONS_00040236 ID=TCONS_00040236|Name=TCONS_00040236|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0002358:17939..20562- (Clytia hemisphaerica)
CAAAGAAAAGATGATAATATACATACCGCACGAATTCCAGAGGACTTAGT
CGCAATGATAAATGAATTCAAATCTAAAATGATGGATTTGGTGATTGTCT
ATAATTCGGAAGATGTCAATTTCGTCCCTCAAACAGTTTGTGTCCTTGAT
TTTAACGGAGAGGTTTTGGTGCTGGGAATCCCAGAATATCNTTGTGTCCT
TGATTTTAACGGAGAGGTTTTGGTGCTGGGAATCCCAGAATATCCTTTGA
AAAAAACATACGAGGGGAAAGTCTATGCAAAATTCACTGGAGAGTATAAT
ATCGGCTACACAAAGTATGAAAGTGGAGATTCAGCTCAAAATCTATCAGT
GACTTGCAATGGAAGAAAGAATGCTTGGGCAAACGTCATTGTACCCTTCG
AGTGGAAAGTAATAATGTGGGCTAATAAAGATCTTAAAGATGAACAACCC
AACCCTAACTTACCTTCAGAGTACACCATCTTCAATTTCAATGTTGTTGC
AAGGCCATTCGAAATTTATAAAATACAATGGCAAAGAAAAGATGATAATA
TACATACCGCACGAATTCCAGAGGACTTAGTCGCAATGATAAATGAATTC
AAATCTAAAATGATGGATTTGGTGATTGTCTATAATTCGGAAGATGTCAA
TTTCGTCCCTCAAACAGTTTGTGTCCTTGATTTTAACGGAGAGGTTTTGG
TGCTGGGAATCCCAGAATATCNTTGTGTCCTTGATTTTAACGGAGAGGTT
TTGGTGCTGGGAATCCCAGAATATCCTTTGAAAAAAACATACGAGGGGAA
AGTCTATGCAAAATTCACTGGAGAGTATAATATCGGCTACACAAAGTATG
AAAGTGGAGATTCAGCTCAAAATCTATCAGTGACTTGCAATGGAAGAAAG
AATGCTTGGGCAAACGTCATTGTACCCTTCGAGTGGAAAGTAATAATGTG
GGCTAATAAAGATCTTAAAGATGAACAACCCAACCCTAACTTACCTTCAG
AGTACACCATCTTCAATTTCAATGTTGTTGCAAGGCCATTCGAAATTTAT
AAAATACAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024415XLOC_024415Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040236-proteinTCONS_00040236-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040236-exon-sc0002358-1575043694:20409..20562TCONS_00040236-exon-sc0002358-1575043694:20409..20562Clytia hemisphaericaexon
TCONS_00040236-exon-sc0002358-1575043694:17939..18318TCONS_00040236-exon-sc0002358-1575043694:17939..18318Clytia hemisphaericaexon
TCONS_00040236-exon-sc0002358-1510915933:20409..20562TCONS_00040236-exon-sc0002358-1510915933:20409..20562Clytia hemisphaericaexon
TCONS_00040236-exon-sc0002358-1510915933:17939..18318TCONS_00040236-exon-sc0002358-1510915933:17939..18318Clytia hemisphaericaexon
TCONS_00040236-exon-sc0002358-1491911889:20409..20562TCONS_00040236-exon-sc0002358-1491911889:20409..20562Clytia hemisphaericaexon
TCONS_00040236-exon-sc0002358-1491911889:17939..18318TCONS_00040236-exon-sc0002358-1491911889:17939..18318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002358supercontigsc0002358:17939..20562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161336	0	0	0.120922	0	0	0	0	0.140677	0.231246	0	0.0824068	1.4295	1.02865	0.0838176	0.0787984	0	0.294698	1.91846	3.99644	0.854517	0.706455	0.219527	0.602987	0.353139	0.339931	0.272832	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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